Evidence map›Paper›PMID 37662429›Full record

ArticleFrontiers in bioengineering and biotechnology2023

The mycoremediation potential of the armillarioids: a comparative genomics analysis.

Simang Champramary, Boris Indic, Attila Szűcs, Chetna Tyagi, Omar Languar, K M Faridul Hasan, András Szekeres, Csaba Vágvölgyi, László Kredics, György Sipos

Erratum issuedOpen access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Frontiers in bioengineering and biotechnology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
2.8field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 7 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Simang ChampramaryFunctional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary.
Boris IndicFunctional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary.
Attila SzűcsDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Chetna TyagiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Omar LanguarFunctional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary.
K M Faridul HasanFibre and Nanotechnology Program, Faculty of Wood Engineering and Creative Industries, University of Sopron, Sopron, Hungary.
András SzekeresDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
Csaba VágvölgyiDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
László KredicsDepartment of Microbiology, Faculty of Science and Informatics, University of Szeged, Szeged, Hungary.
György SiposFunctional Genomics and Bioinformatics Group, Institute of Forest and Natural Resource Management, Faculty of Forestry, University of Sopron, Sopron, Hungary.
University of Szeged · HUUniversity of Sopron · HU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genes involved in mycoremediation were identified by comparative genomics analysis in 10 armillarioid species and selected groups of white-rot Basidiomycota (14) and soft-rot Ascomycota (12) species to confine the distinctive bioremediation capabilities of the armillarioids. The genomes were explored using phylogenetic principal component analysis (pPCA), searching for genes already documented in a biocatalysis/biodegradation database. The results underlined a distinct, increased potential of aromatics-degrading genes/enzymes in armillarioids, with particular emphasis on a high copy number and diverse spectrum of benzoate 4-monooxygenase [EC:1.14.14.92] homologs. In addition, other enzymes involved in the degradation of various monocyclic aromatics were more abundant in the armillarioids than in the other white-rot basidiomycetes, and enzymes involved in the degradation of polycyclic aromatic hydrocarbons (PAHs) were more prevailing in armillarioids and other white-rot species than in soft-rot Ascomycetes. Transcriptome profiling of

Indexed as

armillarioidsbenzoate 4-monooxygenasebiodegradationmycoremediationphylogenetic principal component analysiswhite-rot

Identifiers

PMID37662429
PMCPMC10470841
OpenAlexW4385981889

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.