Evidence map›Paper›PMID 37662366›Full record

ArticlebioRxiv : the preprint server for biology2023

The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity.

Dennis Wm Stevenson, Srividya Ramakrishnan, Cristiane de Santis Alves, Laís Araujo Coelho, Melissa Kramer, Sara Goodwin, Olivia Mendevil Ramos, Gil Eshel, Veronica M Sondervan, Samantha Frangos and 20 more

Open access · greenAbstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 0 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

30 authors at 10 institutions in 4 countries.

Dennis Wm StevensonThe New York Botanical Garden, 2900 Southern Boulevard, Bronx, NY 10458, USA.
Srividya RamakrishnanDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Cristiane de Santis AlvesCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Laís Araujo CoelhoDepartment of Epidemiology and Biostatistics, School of Public Health; Institute for Genomics in Health; Division of Infectious Diseases, Department of Medicine, and Department of Cell Biology, College of Medicine, SUNY Downstate Health Sciences University, Brooklyn, NY 11203-2098, USA.
Melissa KramerCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Sara GoodwinCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Olivia Mendevil RamosCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Gil EshelCenter for Genomics & Systems Biology, New York University, New York, NY 10003, USA.
Veronica M SondervanCenter for Genomics & Systems Biology, New York University, New York, NY 10003, USA.
Samantha FrangosCenter for Genomics & Systems Biology, New York University, New York, NY 10003, USA.
Cecilia Zumajo-CardonaThe New York Botanical Garden, 2900 Southern Boulevard, Bronx, NY 10458, USA.
Katherine JenikeDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Shujun OuDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
Xiaojin WangPurdue University, 610 Purdue Mall, West Lafayette, IN 47907, USA.
Yin Peng LeeCharles River Laboratories Australia, 17-19 Hi-Tech Ct, Kilsyth VIC 3137, Australia.
Stella LokeCharles River Laboratories Australia, 17-19 Hi-Tech Ct, Kilsyth VIC 3137, Australia.
Maurizio RossettoResearch Centre for Ecosystem Resilience, Royal Botanic Garden Sydney, Sydney, NSW 2000, Australia.
Hannah McPhersonNational Herbarium of New South Wales, Australian Botanic Garden, Mount Annan, NSW 2567, Australia.
Sebastiano NigrisDipartimento di Biologia, Università degli studi di Padova, via U. Bassi 58/B, 35131 Padova, Italy; and Botanical Garden, Università degli studi di Padova, via Orto Botanico 15, 35123 Padova, Italy.
Silvia MoschinDipartimento di Biologia, Università degli studi di Padova, via U. Bassi 58/B, 35131 Padova, Italy; and Botanical Garden, Università degli studi di Padova, via Orto Botanico 15, 35123 Padova, Italy.
Damon P LittleThe New York Botanical Garden, 2900 Southern Boulevard, Bronx, NY 10458, USA.
Manpreet S KatariCenter for Genomics & Systems Biology, New York University, New York, NY 10003, USA.
Kranthi VaralaPurdue University, 610 Purdue Mall, West Lafayette, IN 47907, USA.
Sergios-Orestis KolokotronisDepartment of Epidemiology and Biostatistics, School of Public Health; Institute for Genomics in Health; Division of Infectious Diseases, Department of Medicine, and Department of Cell Biology, College of Medicine, SUNY Downstate Health Sciences University, Brooklyn, NY 11203-2098, USA.
Barbara AmbroseThe New York Botanical Garden, 2900 Southern Boulevard, Bronx, NY 10458, USA.
Larry J CroftSchool of Medicine, Deakin University, Waurn Ponds, Victoria 3216, Australia.
Gloria M CoruzziCenter for Genomics & Systems Biology, New York University, New York, NY 10003, USA.
Michael SchatzDepartment of Computer Science, Johns Hopkins University, Baltimore, MD, USA.
W Richard McCombieCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
Robert A MartienssenCold Spring Harbor Laboratory, Cold Spring Harbor, New York, USA.
New York University · USCold Spring Harbor Laboratory · USJohns Hopkins University · USNew York Botanical Garden · USHoward Hughes Medical Institute · USPurdue University West Lafayette · USRoyal Botanic Garden Sydney · AUSUNY Downstate Health Sciences University · USUniversity of Padua · ITDeakin University · AU

Funding

Democratization of Data Analysis in Life Sciences Through GalaxyU24HG006620 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI Daniel James Blankenberg, Jeremy Goecks · 2021 to 2026
$9.8M
The Quantitative Biological Systems Training (QBIST) ProgramT32GM132037 · NIGMS · NEW YORK UNIVERSITY · PI David Gresham, Christine Vogel · 2019 to 2026
$2.3M
The Development and Optimization of Long-Read Sequencing Applications to Cancer Genomics in a Core SettingR50CA243890 · NCI · COLD SPRING HARBOR LABORATORY · PI GOODWIN, SARA · 2019 to 2025
$920k
Graphical Processing Units and a Large-Memory Compute Node for Applications in Genomics, Neuroscience, and Structural BiologyS10OD028632 · OD · COLD SPRING HARBOR LABORATORY · PI SIEPEL, ADAM CHARLES · 2020 to 2020
$437k
NCI NIH HHS R50 CA243890NHGRI NIH HHS U24 HG006620NIGMS NIH HHS T32 GM132037NIH HHS S10 OD028632
6 · The paper itself

Abstract

We present the genome of the living fossil,

Identifiers

PMID37662366
PMCPMC10473749
OpenAlexW4386182371

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.