Evidence map›Paper›PMID 37658522›Full record

ArticleAdvanced science (Weinheim, Baden-Wurttemberg, Germany)2023

MicroMagnify: A Multiplexed Expansion Microscopy Method for Pathogens and Infected Tissues.

Zhangyu Cheng, Caroline Stefani, Thomas Skillman, Aleksandra Klimas, Aramchan Lee, Emma F DiBernardo, Karina Mueller Brown, Tatyana Milman, Yuhong Wang, Brendan R Gallagher and 8 more

Open access · goldAbstract read
In one paragraph

Article in Advanced science (Weinheim, Baden-Wurttemberg, Germany), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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  11. MicroMagnify: A Multiplexed Expansion Microscopy Method for Pathogens and Infected Tissues.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 2 countries.

Zhangyu ChengDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.ORCID 0000-0002-6131-1414
Caroline StefaniBenaroya Research Institute at Virginia Mason, 1201 9th Ave, Seattle, WA, 98101, USA.
Thomas SkillmanImmersive Science LLC, 6835 113TH PL SE, Newcastle, WA, 98056, USA.
Aleksandra KlimasDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Aramchan LeeDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Emma F DiBernardoDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Karina Mueller BrownDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Tatyana MilmanWills Eye Hospital and Jefferson University Hospital, Philadelphia, PA, 19107, USA.
Yuhong WangDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Brendan R GallagherDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Katherine LagreeDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Bhanu P JenaViron Molecular Medicine Institute, 201 Washington Street, Boston, MA, 02201, USA.
Jose S PulidoWills Eye Hospital and Jefferson University Hospital, Philadelphia, PA, 19107, USA.
Scott G FillerLundquist Institute for Biomedical Innovation at Harbor-UCLA Medical Center, 1124 W Carson St, Torrance, CA, 90502, USA.
Aaron P MitchellDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
N Luisa HillerDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.
Adam Lacy-HulbertBenaroya Research Institute at Virginia Mason, 1201 9th Ave, Seattle, WA, 98101, USA.
Yongxin ZhaoDepartment of Biological Sciences, Carnegie Mellon University, 4400 Fifth Avenue, Pittsburgh, PA, 15213, USA.ORCID 0000-0003-4188-5725
Carnegie Mellon University · USVirginia Mason Medical Center · USWills Eye Hospital · USImmersion (United States) · USUniversity of California, Los Angeles · USUniversity of Georgia · USWayne State University · US

Funding

C. albicans invasion and proliferation during oral infectionR01DE026600 · NIDCR · LUNDQUIST INSTITUTE FOR BIOMEDICAL INNOVATION AT HARBOR-UCLA MEDICAL CENTER · PI FILLER, SCOTT G, MITCHELL, AARON P · 2017 to 2021
$3.0M
THE SYNAPTIC TYPE LANDSCAPE OF ALZHEIMER'S DISEASE VISUALIZED BY MULTIPLEX EXPANSION SYNAPTIC NANOSCOPYDP2EB028111 · NIBIB · CARNEGIE-MELLON UNIVERSITY · PI ZHAO, YONGXIN · 2018 to 2022
$2.6M
NIBIB NIH HHS DP2 EB028111NIDCR NIH HHS R01 DE026600NIDCR NIH HHS R01DE026600NIH HHS 3DP2EB028111-01S1NIH HHS DP2 3DP2EB028111-01
6 · The paper itself

Abstract

Super-resolution optical imaging tools are crucial in microbiology to understand the complex structures and behavior of microorganisms such as bacteria, fungi, and viruses. However, the capabilities of these tools, particularly when it comes to imaging pathogens and infected tissues, remain limited. MicroMagnify (µMagnify) is developed, a nanoscale multiplexed imaging method for pathogens and infected tissues that are derived from an expansion microscopy technique with a universal biomolecular anchor. The combination of heat denaturation and enzyme cocktails essential is found for robust cell wall digestion and expansion of microbial cells and infected tissues without distortion. µMagnify efficiently retains biomolecules suitable for high-plex fluorescence imaging with nanoscale precision. It demonstrates up to eightfold expansion with µMagnify on a broad range of pathogen-containing specimens, including bacterial and fungal biofilms, infected culture cells, fungus-infected mouse tone, and formalin-fixed paraffin-embedded human cornea infected by various pathogens. Additionally, an associated virtual reality tool is developed to facilitate the visualization and navigation of complex 3D images generated by this method in an immersive environment allowing collaborative exploration among researchers worldwide. µMagnify is a valuable imaging platform for studying how microbes interact with their host systems and enables the development of new diagnosis strategies against infectious diseases.

Indexed as

BacteriaMicroscopyAnimalsHumansMiceOptical Imagingexpansion microscopyinfected tissuemicrobiologymultiplexing

Identifiers

PMID37658522
PMCPMC10602566
OpenAlexW4386386432

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.