Evidence map›Paper›PMID 37655021›Full record

ArticleChemical science2023

Fluorescence polarisation activity-based protein profiling for the identification of deoxynojirimycin-type inhibitors selective for lysosomal retaining alpha- and beta-glucosidases.

Daniël van der Gracht, Rhianna J Rowland, Véronique Roig-Zamboni, Maria J Ferraz, Max Louwerse, Paul P Geurink, Johannes M F G Aerts, Gerlind Sulzenbacher, Gideon J Davies, Herman S Overkleeft and 1 more

Open access · diamondAbstract read
In one paragraph

Article in Chemical science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Daniël van der GrachtLeiden Institute of Chemistry, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands h.s.overkleeft@lic.leidenuniv.nl m.e.artola@lic.leidenuniv.nl.
Rhianna J RowlandYork Structural Biology Laboratory, Department of Chemistry, The University of York York YO10 5DD UK.ORCID https://orcid.org/0000-0002-8717-346X
Véronique Roig-ZamboniArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Aix-Marseille University Marseille France.
Maria J FerrazLeiden Institute of Chemistry, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands h.s.overkleeft@lic.leidenuniv.nl m.e.artola@lic.leidenuniv.nl.
Max LouwerseLeiden Institute of Chemistry, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands h.s.overkleeft@lic.leidenuniv.nl m.e.artola@lic.leidenuniv.nl.ORCID https://orcid.org/0000-0002-8584-9745
Paul P GeurinkDepartment of Cell and Chemical Biology, Leiden University Medical Centre 2333 ZC Leiden The Netherlands.ORCID https://orcid.org/0000-0003-1849-1111
Johannes M F G AertsLeiden Institute of Chemistry, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands h.s.overkleeft@lic.leidenuniv.nl m.e.artola@lic.leidenuniv.nl.ORCID https://orcid.org/0000-0001-8168-2565
Gerlind SulzenbacherArchitecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, Aix-Marseille University Marseille France.ORCID https://orcid.org/0000-0003-4844-2820
Gideon J DaviesYork Structural Biology Laboratory, Department of Chemistry, The University of York York YO10 5DD UK.ORCID https://orcid.org/0000-0002-7343-776X
Herman S OverkleeftLeiden Institute of Chemistry, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands h.s.overkleeft@lic.leidenuniv.nl m.e.artola@lic.leidenuniv.nl.ORCID https://orcid.org/0000-0001-6976-7005
Marta ArtolaLeiden Institute of Chemistry, Leiden University P. O. Box 9502 2300 RA Leiden The Netherlands h.s.overkleeft@lic.leidenuniv.nl m.e.artola@lic.leidenuniv.nl.ORCID https://orcid.org/0000-0002-3051-3902
Leiden University · NLCentre National de la Recherche Scientifique · FRUniversity of York · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lysosomal exoglycosidases are responsible for processing endocytosed glycans from the non-reducing end to produce the corresponding monosaccharides. Genetic mutations in a particular lysosomal glycosidase may result in accumulation of its particular substrate, which may cause diverse lysosomal storage disorders. The identification of effective therapeutic modalities to treat these diseases is a major yet poorly realised objective in biomedicine. One common strategy comprises the identification of effective and selective competitive inhibitors that may serve to stabilize the proper folding of the mutated enzyme, either during maturation and trafficking to, or residence in, endo-lysosomal compartments. The discovery of such inhibitors is greatly aided by effective screening assays, the development of which is the focus of the here-presented work. We developed and applied fluorescent activity-based probes reporting on either human GH30 lysosomal glucosylceramidase (GBA1, a retaining β-glucosidase) or GH31 lysosomal retaining α-glucosidase (GAA). FluoPol-ABPP screening of our in-house 358-member iminosugar library yielded compound classes selective for either of these enzymes. In particular, we identified a class of

Identifiers

PMID37655021
PMCPMC10466331
OpenAlexW4385670965

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.