Evidence map›Paper›PMID 37652093›Full record

ArticleInternational journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases2023

Interpretation of molecular detection of avian influenza A virus in respiratory specimens collected from live bird market workers in Dhaka, Bangladesh: infection or contamination?

Md Zakiul Hassan, Katharine Sturm-Ramirez, Md Saiful Islam, Sadia Afreen, Mohammed Ziaur Rahman, Mohammad Abdullah Heel Kafi, Sukanta Chowdhury, Salah Uddin Khan, Mustafizur Rahman, Sharifa Nasreen and 8 more

Open access · goldAbstract read
In one paragraph

Article in International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 7 citations in OpenAlex.

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  11. Avian influenza overview June-September 2023.EFSA journal. European Food Safety Authority · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 4 countries.

Md Zakiul HassanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh. Electronic address: zhassan@icddrb.org.
Katharine Sturm-RamirezCenters for Disease Control and Prevention (CDC), Atlanta, USA.
Md Saiful IslamUniversity of New South Wales, Sydney, Australia.
Sadia AfreenInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Mohammed Ziaur RahmanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Mohammad Abdullah Heel KafiDalla Lana School of Public Health, University of Toronto, Toronto, Canada.
Sukanta ChowdhuryInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Salah Uddin KhanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Mustafizur RahmanInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh.
Sharifa NasreenInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh; University of British Columbia, Vancouver, Canada.
C Todd DavisCenters for Disease Control and Prevention (CDC), Atlanta, USA.
Min Z LevineCenters for Disease Control and Prevention (CDC), Atlanta, USA.
Mahmudur RahmanInstitute of Epidemiology, Disease Control and Research (IEDCR), Dhaka, Bangladesh.
Stephen P LubyStanford University, Stanford, USA.
Eduardo Azziz-BaumgartnerCenters for Disease Control and Prevention (CDC), Atlanta, USA.
A D IulianoCenters for Disease Control and Prevention (CDC), Atlanta, USA.
Timothy M UyekiCenters for Disease Control and Prevention (CDC), Atlanta, USA.
Emily S GurleyInternational Centre for Diarrhoeal Disease Research, Dhaka, Bangladesh; Johns Hopkins Bloomberg School of Public Health, Baltimore, USA.
International Centre for Diarrhoeal Disease Research · BDCenters for Disease Control and Prevention · USJohns Hopkins University · USStanford University · USUniversity of British Columbia · CAUniversity of Toronto · CAUNSW Sydney · AU

Funding

Intramural CDC HHS CC999999NCPDCID CDC HHS U01 CI000628
6 · The paper itself

Abstract

objectivesInterpreting real-time reverse transcription-polymerase chain reaction (rRT-PCR) results for human avian influenza A virus (AIV) detection in contaminated settings like live bird markets (LBMs) without serology or viral culture poses a challenge.

methodsDuring February-March 2012 and November 2012-February 2013, we screened workers at nine LBMs in Dhaka, Bangladesh, to confirm molecular detections of AIV RNA in respiratory specimens with serology. We tested nasopharyngeal (NP) and throat swabs from workers with influenza-like illness (ILI) and NP, throat, and arm swabs from asymptomatic workers for influenza virus by rRT-PCR and sera for seroconversion and antibodies against HPAI A(H5N1) and A(H9N2) viruses.

resultsAmong 1273 ILI cases, 34 (2.6%) had A(H5), 56 (4%) had A(H9), and six (0.4%) had both A(H5) and A(H9) detected by rRT-PCR. Of 192 asymptomatic workers, A(H5) was detected in eight (4%) NP and 38 (20%) arm swabs. Of 28 ILI cases with A(H5) or A(H9) detected, none had evidence of seroconversion, but one (3.5%) and 12 (43%) were seropositive for A(H5) and A(H9), respectively.

conclusionDetection of AIV RNA in respiratory specimens from symptomatic and asymptomatic LBM workers without evidence of seroconversion or virus isolation suggests environmental contamination, emphasizing caution in interpreting rRT-PCR results in high viral load settings.

Indexed as

Influenza A Virus, H5N1 SubtypeInfluenza A Virus, H9N2 SubtypeInfluenza in BirdsAnimalsBangladeshChickensHumansRNARNAA(H5N1) diagnosisAvian influenza A virusHPAI A(H5N1)Live bird marketrRT-PCR resultsViral contamination

Identifiers

PMID37652093
PMCPMC11849796
OpenAlexW4386258471

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.