Evidence map›Paper›PMID 37652038›Full record

ArticleG3 (Bethesda, Md.)2023

Genetic and transcriptomic dissection of host defense to Goss's bacterial wilt and leaf blight of maize.

Yangfan Hao, Ying Hu, Jennifer Jaqueth, Jinguang Lin, Cheng He, Guifang Lin, Mingxia Zhao, Jie Ren, Tej Man Tamang, Sunghun Park and 5 more

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Identification ofPlants (Basel, Switzerland) · 2024
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 2 countries.

Yangfan HaoDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Ying HuDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Jennifer JaquethCorteva Agriscience, Johnston, IA 50131, USA.
Jinguang LinDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Cheng HeDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Guifang LinDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Mingxia ZhaoDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Jie RenDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Tej Man TamangDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.
Sunghun ParkDepartment of Horticulture and Natural Resources, Kansas State University, Manhattan, KS 66506, USA.
Alison E RobertsonDepartment of Plant Pathology, Entomology and Microbiology, Iowa State University, Ames, IA 50010, USA.
Frank F WhiteDepartment of Plant Pathology, University of Florida, Gainesville, FL 32611, USA.
Junjie FuChinese Academy of Agricultural Sciences, Institute of Crop Science, Beijing 100081, China.
Bailin LiCorteva Agriscience, Johnston, IA 50131, USA.
Sanzhen LiuDepartment of Plant Pathology, Kansas State University, Manhattan, KS 66506, USA.ORCID 0000-0002-9513-855X
Kansas State University · USCorteva (United States) · USChinese Academy of Agricultural Sciences · CNIowa State University · USUniversity of Florida · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Goss's wilt, caused by the Gram-positive actinobacterium Clavibacter nebraskensis, is an important bacterial disease of maize. The molecular and genetic mechanisms of resistance to the bacterium, or, in general, Gram-positive bacteria causing plant diseases, remain poorly understood. Here, we examined the genetic basis of Goss's wilt through differential gene expression, standard genome-wide association mapping (GWAS), extreme phenotype (XP) GWAS using highly resistant (R) and highly susceptible (S) lines, and quantitative trait locus (QTL) mapping using 3 bi-parental populations, identifying 11 disease association loci. Three loci were validated using near-isogenic lines or recombinant inbred lines. Our analysis indicates that Goss's wilt resistance is highly complex and major resistance genes are not commonly present. RNA sequencing of samples separately pooled from R and S lines with or without bacterial inoculation was performed, enabling identification of common and differential gene responses in R and S lines. Based on expression, in both R and S lines, the photosynthesis pathway was silenced upon infection, while stress-responsive pathways and phytohormone pathways, namely, abscisic acid, auxin, ethylene, jasmonate, and gibberellin, were markedly activated. In addition, 65 genes showed differential responses (up- or down-regulated) to infection in R and S lines. Combining genetic mapping and transcriptional data, individual candidate genes conferring Goss's wilt resistance were identified. Collectively, aspects of the genetic architecture of Goss's wilt resistance were revealed, providing foundational data for mechanistic studies.

Indexed as

TranscriptomeZea maysBase SequenceChromosome MappingDisease ResistanceGenome-Wide Association StudyPlant Diseasesbacteriumdisease resistanceGoss's wiltmaize diseaseQTLXP-GWAS

Identifiers

PMID37652038
PMCPMC10627284
OpenAlexW4386318324

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.