ArticleNucleic acids research2024
TPIA2: an updated tea plant information archive for Camellia genomics.
Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.
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24 citing papers in PubMed, 45 citations in OpenAlex.
- Pan-genomic and pan-transcriptomic integration unveils evolutionary dynamics and regulatory diversification of the WRKY gene family in Camellia sinensis.BMC plant biology · 2026Article
- Advances in tea breeding in Japan: from traditional methods to genomic approaches.Breeding science · 2026Article
- Genome-wide identification of the aldo-keto reductase gene family and functional characterization ofFrontiers in plant science · 2026Article
- Bioinformatics in crop research: using genomic data for crop improvement.Frontiers in plant science · 2026Review
- Integrated RNA-seq and small RNA-seq profiling reveals tissue-associated transcriptional programs and candidate miRNA-mRNA relationships across tea floral tissues.Frontiers in plant science · 2026Article
- Pangenome-wide identification and analysis of the heat shock transcription factor gene family in tea plant (Frontiers in plant science · 2026Article
- Genome-wide identification ofPeerJ · 2026Article
- Full-length transcriptome ofPlant biotechnology (Tokyo, Japan) · 2025Article
- Integrated Transcriptomic and Metabolomic Analysis Reveals Metabolic Heterosis in Hybrid Tea Plants (Genes · 2025Article
- Genome-wide identification of sucrose synthase gene family from Camellia sinensis and regulatory role of CsSUS3 in sucrose metabolism in post-harvest tea leaves.BMC plant biology · 2025Article
- Decoding hybrid origins and genetic architecture of leaf traits variation inHorticulture research · 2025Article
- Functional characterization of CsSTK in floral organ development and its positive regulation by CsBPC5 in tea plants.BMC plant biology · 2025Article
- Analysis of thaumatin-like protein (TLP) gene family in tea plant revealed that CsTLP8 contributes to tea blister blight resistance.BMC plant biology · 2025Article
- Domain characteristics, classification and expression profiles in response to various abiotic stresses of four HD-Zip subfamilies in tea plant.BMC plant biology · 2025Article
- Divergent MYB paralogs determine spatial distribution of linalool mediated by JA and DNA demethylation participating in aroma formation and cold tolerance of tea plants.Plant biotechnology journal · 2025Article
- Evolution and amplification of the trehalose-6-phosphate synthase gene family in Theaceae.BMC genomics · 2025Article
- Deactivating mutations in the catalytic site of a companion serine carboxypeptidase-like acyltransferase enhance catechin galloylation inHorticulture research · 2025Article
- Genome-wide identification, evolution and expression of theFrontiers in plant science · 2025Article
- Evolution and functional divergence of glycosyltransferase genes shaped the quality and cold tolerance of tea plants.The Plant cell · 2024Article
- CGD: a multi-omics database forHorticulture research · 2024Article
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Authors and funding
7 authors at 1 institution in 1 country.
Funding
Abstract
The genus Camellia consists of about 200 species, which include many economically important species widely used for making tea, ornamental flowers and edible oil. Here, we present an updated tea plant information archive for Camellia genomics (TPIA2; http://tpia.teaplants.cn) by integrating more novel large-scale genomic, transcriptomic, metabolic and genetic variation datasets as well as a variety of useful tools. Specifically, TPIA2 hosts all currently available and well assembled 10 Camellia genomes and their comprehensive annotations from three major sections of Camellia. A collection of 15 million SNPs and 950 950 small indels from large-scale genome resequencing of 350 diverse tea accessions were newly incorporated, followed by the implementation of a novel 'Variation' module to facilitate data retrieval and analysis of the functionally annotated variome. Moreover, 116 Camellia transcriptomes were newly assembled and added, leading to a significant extension of expression profiles of Camellia genes to 13 developmental stages and eight abiotic/biotic treatments. An updated 'Expression' function has also been implemented to provide a comprehensive gene expression atlas for Camellia. Two novel analytic tools (e.g. Gene ID Convert and Population Genetic Analysis) were specifically designed to facilitate the data exchange and population genomics in Camellia. Collectively, TPIA2 provides diverse updated valuable genomic resources and powerful functions, and will continue to be an important gateway for functional genomics and population genetic studies in Camellia.
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