Evidence map›Paper›PMID 37648982›Full record

ArticleBMC microbiology2023

Metagenomic and culture-dependent approaches unveil active microbial community and novel functional genes involved in arsenic mobilization and detoxification in groundwater.

Farzana Diba, M Nazmul Hoque, M Shaminur Rahman, Farhana Haque, Khondaker Md Jaminur Rahman, Md Moniruzzaman, Mala Khan, M Anwar Hossain, Munawar Sultana

Abstract read
In one paragraph

Article in BMC microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Draft genome sequence ofMicrobiology resource announcements · 2024
    Article
  8. Draft genome sequence of an arsenotrophicMicrobiology resource announcements · 2024
    Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Farzana DibaDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
M Nazmul HoqueDepartment of Gynecology, Obstetrics and Reproductive Health, Bangabandhu Sheikh Mujibur Rahman Agricultural University, Gazipur, 1706, Bangladesh.
M Shaminur RahmanDepartment of Microbiology, Jashore University of Science and Technology, Jashore, 7408, Bangladesh.
Farhana HaqueDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
Khondaker Md Jaminur RahmanEnvironmental Science Division, National Institute of Biotechnology, Savar, Dhaka, 1349, Bangladesh.
Md MoniruzzamanBangladesh Reference Institute for Chemical Measurements (BRiCM), Dr. Qudrat-E-Khuda Road, Dhanmondi, Dhaka, 1205, Bangladesh.
Mala KhanBangladesh Reference Institute for Chemical Measurements (BRiCM), Dr. Qudrat-E-Khuda Road, Dhanmondi, Dhaka, 1205, Bangladesh.
M Anwar HossainDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh.
Munawar SultanaDepartment of Microbiology, University of Dhaka, Dhaka, 1000, Bangladesh. munawar@du.ac.bd.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundArsenic (As) and its species are major pollutants in ecological bodied including groundwater in Bangladesh rendering serious public health concern. Bacteria with arsenotrophic genes have been found in the aquifer, converting toxic arsenite [As (III)] to less toxic arsenate [As (V)] that is easily removed using chemical and biological trappers. In this study, genomic and metagenomic approaches parallel to culture-based assay (Graphical abstract) have made it possible to decipher phylogenetic diversity of groundwater arsenotrophic microbiomes along with elucidation of their genetic determinants.

resultsSeventy-two isolates were retrieved from six As-contaminated (average As concentration of 0.23 mg/L) groundwater samples from Munshiganj and Chandpur districts of Bangladesh. Twenty-three isolates harbored arsenite efflux pump (arsB) gene with high abundance, and ten isolates possessing arsenite oxidase (aioA) gene, with a wide range of minimum inhibitory concentration, MIC

conclusionsCulture-dependent and -independent shotgun metagenomic investigation elucidated arsenotrophic microbiomes and their functions in As biogeochemical transformation. These findings laid a foundation for further large-scale researches on the arsenotrophic microbiomes and their concurrent functions in As biogeochemical transformation in As-contaminated areas of Bangladesh and beyond.

Indexed as

ArsenicArsenitesMicrobiotaPhylogenyArsenicarseniteArsenitesAMRsArsenotrophic bacteriaArsenotrophic genesBioremediationVFGsWhole-genome shotgun sequencing

Identifiers

PMID37648982
PMCPMC10466822

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.