Evidence map›Paper›PMID 37647884›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2023

Transportability of bacterial infection prediction models for critically ill patients.

Garrett Eickelberg, Lazaro Nelson Sanchez-Pinto, Adrienne Sarah Kline, Yuan Luo

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Garrett EickelbergDepartment of Preventive Medicine (Health & Biomedical Informatics), Feinberg School of Medicine, Chicago, IL 60611, United States.ORCID 0000-0002-5732-735X
Lazaro Nelson Sanchez-PintoDepartment of Preventive Medicine (Health & Biomedical Informatics), Feinberg School of Medicine, Chicago, IL 60611, United States.ORCID 0000-0002-7434-6747
Adrienne Sarah KlineDepartment of Preventive Medicine (Health & Biomedical Informatics), Feinberg School of Medicine, Chicago, IL 60611, United States.
Yuan LuoDepartment of Preventive Medicine (Health & Biomedical Informatics), Feinberg School of Medicine, Chicago, IL 60611, United States.ORCID 0000-0003-0195-7456

Funding

CRITICAL: Collaborative Resource for Intensive care Translational science, Informatics, Comprehensive Analytics, and LearningU01TR003528 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CIMINO, JAMES J, LUO, YUAN · 2021 to 2024
$4.9M
Pediatric COVID-19 Severity Dashboard During Delta Variant CirculationR01HD105939 · NICHD · UNIVERSITY OF COLORADO DENVER · PI Tellen Bennett, Lazaro Nelson Sanchez-Pinto · 2021 to 2026
$4.6M
Modeling the Incompleteness and Biases of Health DataR01LM013337 · NLM · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LUO, YUAN · 2020 to 2023
$1.3M
NCATS NIH HHS U01 TR003528NICHD NIH HHS R01 HD105939NICHD NIH HHS R01HD105939NIH HHS U01TR003528NLM NIH HHS 5T32LM01220304NLM NIH HHS R01 LM013337
6 · The paper itself

Abstract

objectiveBacterial infections (BIs) are common, costly, and potentially life-threatening in critically ill patients. Patients with suspected BIs may require empiric multidrug antibiotic regimens and therefore potentially be exposed to prolonged and unnecessary antibiotics. We previously developed a BI risk model to augment practices and help shorten the duration of unnecessary antibiotics to improve patient outcomes. Here, we have performed a transportability assessment of this BI risk model in 2 tertiary intensive care unit (ICU) settings and a community ICU setting. We additionally explored how simple multisite learning techniques impacted model transportability.

methodsPatients suspected of having a community-acquired BI were identified in 3 datasets: Medical Information Mart for Intensive Care III (MIMIC), Northwestern Medicine Tertiary (NM-T) ICUs, and NM "community-based" ICUs. ICU encounters from MIMIC and NM-T datasets were split into 70/30 train and test sets. Models developed on training data were evaluated against the NM-T and MIMIC test sets, as well as NM community validation data.

resultsDuring internal validations, models achieved AUROCs of 0.78 (MIMIC) and 0.81 (NM-T) and were well calibrated. In the external community ICU validation, the NM-T model had robust transportability (AUROC 0.81) while the MIMIC model transported less favorably (AUROC 0.74), likely due to case-mix differences. Multisite learning provided no significant discrimination benefit in internal validation studies but offered more stability during transport across all evaluation datasets. DISCUSSION: These results suggest that our BI risk models maintain predictive utility when transported to external cohorts.

conclusionOur findings highlight the importance of performing external model validation on myriad clinically relevant populations prior to implementation.

Indexed as

Bacterial InfectionsCritical IllnessAnti-Bacterial AgentsCritical CareHumansIntensive Care UnitsAnti-Bacterial Agentsantibiotic stewardshipcritical careelectronic health recordsexternal validationmachine learning

Identifiers

PMID37647884
PMCPMC10746321

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.