Evidence map›Paper›PMID 37647128›Full record

ArticleJournal of the American Chemical Society2023

The Transition from Unfolded to Folded G-Quadruplex DNA Analyzed and Interpreted by Two-Dimensional Infrared Spectroscopy.

A Larasati Soenarjo, Zhihao Lan, Igor V Sazanovich, Yee San Chan, Magnus Ringholm, Ajay Jha, David R Klug

Open access · hybridAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
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  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

A Larasati SoenarjoDepartment of Chemistry, Imperial College London, White City Campus, London W12 0BZ, United Kingdom.ORCID 0000-0002-8283-4329
Zhihao LanRosalind Franklin Institute, Harwell, Oxfordshire OX11 0QX, United Kingdom.
Igor V SazanovichCentral Laser Facility, Research Complex at Harwell, STFC Rutherford Appleton Laboratory, Harwell, Oxfordshire OX11 0QX, United Kingdom.
Yee San ChanDepartment of Chemistry, Imperial College London, White City Campus, London W12 0BZ, United Kingdom.
Magnus RingholmHylleraas Centre for Quantum Molecular Sciences, Department of Chemistry, UiT The Arctic University of Norway, N-9037 Tromsø, Norway.
Ajay JhaRosalind Franklin Institute, Harwell, Oxfordshire OX11 0QX, United Kingdom.ORCID 0000-0002-4489-518X
David R KlugDepartment of Chemistry, Imperial College London, White City Campus, London W12 0BZ, United Kingdom.ORCID 0000-0001-9301-1654
Imperial College London · GBRosalind Franklin Institute · GBRutherford Appleton Laboratory · GBUiT The Arctic University of Norway · NOUniversity of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P504877/1
6 · The paper itself

Abstract

A class of DNA folds/structures known collectively as G-quadruplexes (G4) commonly forms in guanine-rich areas of genomes. G4-DNA is thought to have a functional role in the regulation of gene transcription and telomerase-mediated telomere maintenance and, therefore, is a target for drugs. The details of the molecular interactions that cause stacking of the guanine-tetrads are not well-understood, which limits a rational approach to the drugability of G4 sequences. To explore these interactions, we employed electron-vibration-vibration two-dimensional infrared (EVV 2DIR) spectroscopy to measure extended vibrational coupling spectra for a parallel-stranded G4-DNA formed by the Myc2345 nucleotide sequence. We also tracked the structural changes associated with G4-folding as a function of K

Indexed as

G-QuadruplexesDensity Functional TheoryDNAElectronsSpectrophotometry, InfraredDNA

Identifiers

PMID37647128
PMCPMC10510320
OpenAlexW4386272172

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.