Evidence map›Paper›PMID 37642556›Full record

ArticleEMBO reports2023

Expanded tRNA methyltransferase family member TRMT9B regulates synaptic growth and function.

Caley A Hogan, Scott J Gratz, Jennifer L Dumouchel, Rajan S Thakur, Ambar Delgado, Jenna M Lentini, Kimberly R Madhwani, Dragony Fu, Kate M O'Connor-Giles

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. tRNA modifications in viral replication.The Journal of biological chemistry · 2026
    Review
  3. Article
  4. Article
  5. Article
  6. tRNA modification enzyme-dependent redox homeostasis regulates synapse formation and memory.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  7. Review
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Caley A Hogan *Genetics Training Program, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0002-6025-0162
Scott J Gratz *Department of Neuroscience, Brown University, Providence, RI, USA.ORCID 0000-0002-0106-8336
Jennifer L Dumouchel *Therapeutic Sciences Graduate Program, Brown University, Providence, RI, USA.ORCID 0000-0001-9954-2149
Rajan S ThakurDepartment of Neuroscience, Brown University, Providence, RI, USA.ORCID 0000-0002-9511-5729
Ambar DelgadoDepartment of Neuroscience, Brown University, Providence, RI, USA.ORCID 0000-0001-9712-0305
Jenna M LentiniDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.ORCID 0000-0002-4069-4102
Kimberly R MadhwaniNeuroscience Graduate Training Program, Brown University, Providence, RI, USA.ORCID 0000-0002-4400-4463
Dragony FuDepartment of Biology, Center for RNA Biology, University of Rochester, Rochester, NY, USA.ORCID 0000-0002-8725-8658
Kate M O'Connor-GilesDepartment of Neuroscience, Brown University, Providence, RI, USA.ORCID 0000-0002-2259-8408
Brown University · USUniversity of Rochester · USAllen Institute for Brain Science · USUniversity of Wisconsin–Madison · US

Funding

VISUAL INDICES OF NEUROTOXICITYP30ES001247 · NIEHS · UNIVERSITY OF ROCHESTER · PI B Paige Lawrence · 1985 to 2026
$42.8M
XRAY CRYSTALLOGRAPHIC STRUCTURE ANALYSIS: PROTEIN SORTINGP41RR001081 · NCRR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 1985 to 2011
$17.6M
PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM007133 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI PERNA, NICOLE T · 1985 to 2023
$16.5M
Function of TRM9L and tRNA Wobble Uridine Modification in the Nervous SystemR01NS117068 · NINDS · BROWN UNIVERSITY · PI Dragony Fu, Kathaleen M O'Connor-Giles · 2020 to 2026
$2.3M
Predoctoral Training Program in Trans-Disciplinary Pharmacological SciencesT32GM077995 · NIGMS · BROWN UNIVERSITY · PI OANCEA, ELENA · 2010 to 2020
$1.7M
Neurodevelopmental role of a tRNA methyltransferase underlying intellectual disabilityF99NS129128 · NINDS · BROWN UNIVERSITY · PI MADHWANI, KIMBERLY ROSE R. · 2022 to 2023
$96k
NCRR NIH HHS P41 RR001081NIEHS NIH HHS P30 ES001247NIGMS NIH HHS T32 GM007133NIGMS NIH HHS T32 GM077995NINDS NIH HHS F99 NS129128NINDS NIH HHS R01 NS117068
6 · The paper itself

Abstract

Nervous system function rests on the formation of functional synapses between neurons. We have identified TRMT9B as a new regulator of synapse formation and function in Drosophila. TRMT9B has been studied for its role as a tumor suppressor and is one of two metazoan homologs of yeast tRNA methyltransferase 9 (Trm9), which methylates tRNA wobble uridines. Whereas Trm9 homolog ALKBH8 is ubiquitously expressed, TRMT9B is enriched in the nervous system. However, in the absence of animal models, TRMT9B's role in the nervous system has remained unstudied. Here, we generate null alleles of TRMT9B and find it acts postsynaptically to regulate synaptogenesis and promote neurotransmission. Through liquid chromatography-mass spectrometry, we find that ALKBH8 catalyzes canonical tRNA wobble uridine methylation, raising the question of whether TRMT9B is a methyltransferase. Structural modeling studies suggest TRMT9B retains methyltransferase function and, in vivo, disruption of key methyltransferase residues blocks TRMT9B's ability to rescue synaptic overgrowth, but not neurotransmitter release. These findings reveal distinct roles for TRMT9B in the nervous system and highlight the significance of tRNA methyltransferase family diversification in metazoans.

Indexed as

Saccharomyces cerevisiaetRNA MethyltransferasesAnimalsMethylationRNA, TransferUridineRNA, TransfertRNA MethyltransferasesUridineDrosophilaneurotransmitter releasesynapseTRMT9BtRNA methyltransferase

Identifiers

PMID37642556
PMCPMC10561368
OpenAlexW4386256035

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.