Evidence map›Paper›PMID 37642027›Full record

ArticleJournal of the American Heart Association2023

Evolutionary Action-Machine Learning Model Identifies Candidate Genes Associated With Early-Onset Coronary Artery Disease.

Dillon Shapiro, Kwanghyuk Lee, Jennifer Asmussen, Thomas Bourquard, Olivier Lichtarge

Open access · goldAbstract read
In one paragraph

Article in Journal of the American Heart Association, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Review
  6. Phenomics (Cham, Switzerland) · 2024
    Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Dillon ShapiroDepartment of Molecular and Human Genetics Baylor College of Medicine Houston TX USA.ORCID 0000-0002-6670-2983
Kwanghyuk LeeDepartment of Molecular and Human Genetics Baylor College of Medicine Houston TX USA.ORCID 0000-0001-7781-9696
Jennifer AsmussenDepartment of Molecular and Human Genetics Baylor College of Medicine Houston TX USA.ORCID 0000-0002-9280-0333
Thomas BourquardDepartment of Molecular and Human Genetics Baylor College of Medicine Houston TX USA.ORCID 0000-0002-9670-711X
Olivier LichtargeDepartment of Molecular and Human Genetics Baylor College of Medicine Houston TX USA.ORCID 0000-0003-4057-7122
Baylor College of Medicine · US

Funding

Decoding the impact of sex differences on Alzheimer's disease riskR01AG074009 · NIA · BAYLOR COLLEGE OF MEDICINE · PI AL-RAMAHI, ISMAEL, LICHTARGE, OLIVIER · 2021 to 2025
$6.0M
A Knowledge Map to Find Alzheimer's Disease DrugsR01AG061105 · NIA · BAYLOR COLLEGE OF MEDICINE · PI LICHTARGE, OLIVIER · 2018 to 2022
$4.6M
Cognitive Computing of Alzheimer's Disease Genes and RiskU01AG068214 · NIA · BAYLOR COLLEGE OF MEDICINE · PI LICHTARGE, OLIVIER · 2021 to 2025
$4.4M
NIA NIH HHS R01 AG061105NIA NIH HHS R01 AG074009NIA NIH HHS U01 AG068214
6 · The paper itself

Abstract

Background Coronary artery disease is a primary cause of death around the world, with both genetic and environmental risk factors. Although genome-wide association studies have linked >100 unique loci to its genetic basis, these only explain a fraction of disease heritability. Methods and Results To find additional gene drivers of coronary artery disease, we applied machine learning to quantitative evolutionary information on the impact of coding variants in whole exomes from the Myocardial Infarction Genetics Consortium. Using ensemble-based supervised learning, the Evolutionary Action-Machine Learning framework ranked each gene's ability to classify case and control samples and identified 79 significant associations. These were connected to known risk loci; enriched in cardiovascular processes like lipid metabolism, blood clotting, and inflammation; and enriched for cardiovascular phenotypes in knockout mouse models. Among them,

Indexed as

Coronary Artery DiseaseAnimalsBiological EvolutionGenome-Wide Association StudyMachine LearningMiceMice, KnockoutSupervised Machine Learningcoronary artery diseaseevolutionary actiongene‐based associationsmachine learningmyocardial infarction

Identifiers

PMID37642027
PMCPMC10547338
OpenAlexW4386245501

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.