Evidence map›Paper›PMID 37641044›Full record

ArticleBMC veterinary research2023

Molecular characterization of Glaesserella parasuis strains circulating in North American swine production systems.

Robert Mugabi, Ana Paula S Poeta Silva, Xiao Hu, Marcelo Gottschalk, Virginia Aragon, Nubia R Macedo, Orhan Sahin, Perry Harms, Rodger Main, Alexander W Tucker and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC veterinary research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Global whole-genome, phylodynamic, and machine-learning analysis ofApplied and environmental microbiology · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Virulence and Antimicrobial Resistance Characterization ofAntibiotics (Basel, Switzerland) · 2024
    Article
  11. Distribution ofThe Canadian veterinary journal = La revue veterinaire canadienne · 2024
    Article
  12. Detection of antimicrobial resistance inFrontiers in microbiology · 2024
    Article
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Robert MugabiDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Ana Paula S Poeta SilvaDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Xiao HuDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Marcelo GottschalkGroupe de Recherche Sur Les Maladies Infectieuses du Porc, Faculté de Médecine Vétérinaire, Université de Montréal, Montréal, Canada.
Virginia AragonCentre de Recerca en Sanitat Animal (CReSA), Unitat Mixta d'Investigació IRTA-UAB en Sanitat Animal, UniversitatAutònoma de Barcelona (UAB), Campus, Bellaterra, Barcelona, Spain.
Nubia R MacedoDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Orhan SahinDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Perry HarmsPIC North America, Hendersonville, TN, USA.
Rodger MainDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Alexander W TuckerDepartment of Veterinary Medicine, University of Cambridge, Cambridge, CB3 0ES, UK.
Ganwu LiDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA.
Maria J ClavijoDepartment of Veterinary Diagnostic and Production Animal Medicine, Iowa State University, Ames, IA, USA. mclavijo@iastate.edu.
Iowa State University · USUniversitat Autònoma de Barcelona · ESUniversité de Montréal · CAUniversity of Cambridge · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundGlaesserella parasuis is the causative agent of Glässer's disease in pigs. Serotyping is the most common method used to type G. parasuis isolates. However, the high number of non-typables (NT) and low discriminatory power make serotyping problematic. In this study, 218 field clinical isolates and 15 G. parasuis reference strains were whole-genome sequenced (WGS). Multilocus sequence types (MLST), serotypes, core-genome phylogeny, antimicrobial resistance (AMR) genes, and putative virulence gene information was extracted.

resultsIn silico WGS serotyping identified 11 of 15 serotypes. The most frequently detected serotypes were 7, 13, 4, and 2. MLST identified 72 sequence types (STs), of which 66 were novel. The most predominant ST was ST454. Core-genome phylogeny depicted 3 primary lineages (LI, LII, and LIII), with LIIIA sublineage isolates lacking all vtaA genes, based on the structure of the phylogenetic tree and the number of virulence genes. At least one group 1 vtaA virulence genes were observed in most isolates (97.2%), except for serotype 8 (ST299 and ST406), 15 (ST408 and ST552) and NT (ST448). A few group 1 vtaA genes were significantly associated with certain serotypes or STs. The putative virulence gene lsgB, was detected in 8.3% of the isolates which were predominantly of serotype 5/12. While most isolates carried the bcr, ksgA, and bacA genes, the following antimicrobial resistant genes were detected in lower frequency;  blaZ (6.9%), tetM (3.7%), spc (3.7%), tetB (2.8%), bla-ROB-1 (1.8%), ermA (1.8%), strA (1.4%), qnrB (0.5%), and aph3''Ia (0.5%).  

conclusionThis study showed the use of WGS to type G. parasuis isolates and can be considered an alternative to the more labor-intensive and traditional serotyping and standard MLST. Core-genome phylogeny provided the best strain discrimination. These findings will lead to a better understanding of the molecular epidemiology and virulence in G. parasuis that can be applied to the future development of diagnostic tools, autogenous vaccines, evaluation of antibiotic use, prevention, and disease control.

Indexed as

Haemophilus parasuisAnimalsMultilocus Sequence TypingNorth AmericaPhylogenySerogroupSerotypingSwineGlaesserella parasuisMultilocus sequence typingPhylogenyPolyserositisSerotypingSwineWhole-genome sequencing

Identifiers

PMID37641044
PMCPMC10464461
OpenAlexW4386220987

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.