Evidence map›Paper›PMID 37640880›Full record

ArticleNature genetics2023

Solanum americanum genome-assisted discovery of immune receptors that detect potato late blight pathogen effectors.

Xiao Lin, Yuxin Jia, Robert Heal, Maxim Prokchorchik, Maria Sindalovskaya, Andrea Olave-Achury, Moffat Makechemu, Sebastian Fairhead, Azka Noureen, Jung Heo and 10 more

Erratum issuedAbstract read
In one paragraph

Article in Nature genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Article
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  4. Diversification and deployment of PRR and NLR immune receptors in potato.The Plant journal : for cell and molecular biology · 2026
    Review
  5. Advances in CRISPR Plant Applications.International journal of molecular sciences · 2026
    Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Xiao Lin *The Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK. linx@im.ac.cn.ORCID http://orcid.org/0000-0002-3848-0244
Yuxin Jia *Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Area, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.
Robert HealThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Maxim ProkchorchikDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea.ORCID http://orcid.org/0000-0001-9118-6450
Maria SindalovskayaThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Andrea Olave-AchuryThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID http://orcid.org/0000-0001-8309-541X
Moffat MakechemuThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Sebastian FairheadThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Azka NoureenThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Jung HeoDepartment of Biological Science and Institute of Basic Science, Wonkwang University, Iksan, Republic of Korea.
Kamil WitekThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Matthew SmokerThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Jodie TaylorThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.
Ram-Krishna ShresthaThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK.ORCID http://orcid.org/0000-0001-5646-5032
Yoonyoung LeeDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea.
Chunzhi ZhangShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Area, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China.ORCID http://orcid.org/0000-0003-0658-1398
Soon Ju ParkDepartment of Biological Science and Institute of Basic Science, Wonkwang University, Iksan, Republic of Korea.ORCID http://orcid.org/0000-0002-8525-5891
Kee Hoon SohnDepartment of Life Sciences, Pohang University of Science and Technology, Pohang, Republic of Korea. keehoon.sohn@snu.ac.kr.ORCID http://orcid.org/0000-0002-9021-8649
Sanwen HuangShenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Area, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China. huangsanwen@caas.cn.ORCID http://orcid.org/0000-0002-8547-5309
Jonathan D G JonesThe Sainsbury Laboratory, University of East Anglia, Norwich Research Park, Norwich, UK. jonathan.jones@tsl.ac.uk.ORCID http://orcid.org/0000-0002-4953-261X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Potato (Solanum tuberosum) and tomato (Solanum lycopersicon) crops suffer severe losses to late blight caused by the oomycete pathogen Phytophthora infestans. Solanum americanum, a relative of potato and tomato, is globally distributed and most accessions are highly blight resistant. We generated high-quality reference genomes of four S. americanum accessions, resequenced 52 accessions, and defined a pan-NLRome of S. americanum immune receptor genes. We further screened for variation in recognition of 315P. infestans RXLR effectors in 52 S. americanum accessions. Using these genomic and phenotypic data, we cloned three NLR-encoding genes, Rpi-amr4, R02860 and R04373, that recognize cognate P. infestans RXLR effectors PITG_22825 (AVRamr4), PITG_02860 and PITG_04373. These genomic resources and methodologies will support efforts to engineer potatoes with durable late blight resistance and can be applied to diseases of other crops.

Indexed as

Phytophthora infestansSolanumSolanum lycopersicumSolanum tuberosumCrops, AgriculturalGenomics

Identifiers

PMID37640880
PMCPMC10484786

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.