Evidence map›Paper›PMID 37640699›Full record

ArticleNature communications2023

Structural basis of HIV-1 Vif-mediated E3 ligase targeting of host APOBEC3H.

Fumiaki Ito, Ana L Alvarez-Cabrera, Kyumin Kim, Z Hong Zhou, Xiaojiang S Chen

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Fumiaki ItoMolecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA.ORCID http://orcid.org/0000-0002-2274-118X
Ana L Alvarez-CabreraDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA90095, USA.
Kyumin KimMolecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA.ORCID http://orcid.org/0000-0002-1880-7801
Z Hong ZhouDepartment of Microbiology, Immunology and Molecular Genetics, University of California, Los Angeles, CA90095, USA.
Xiaojiang S ChenMolecular and Computational Biology, Department of Biological Sciences, University of Southern California, Los Angeles, CA, 90089, USA. xiaojiac@usc.edu.ORCID http://orcid.org/0000-0001-9574-0551
University of Southern California · USCalifornia NanoSystems Institute · US

Funding

High-Resolution CryoEM Reconstruction of Large ComplexesR01GM071940 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHOU, Z HONG · 2006 to 2025
$5.0M
Structural Basis of APOBEC Functions and Interactions with HIV-VifR01AI150524 · NIAID · UNIVERSITY OF SOUTHERN CALIFORNIA · PI XIAOJIANG S CHEN · 2019 to 2026
$3.8M
NIAID NIH HHS R01 AI150524NIGMS NIH HHS R01 GM071940
6 · The paper itself

Abstract

Human APOBEC3 (A3) cytidine deaminases are antiviral factors that are particularly potent against retroviruses. As a countermeasure, HIV-1 uses a viral infectivity factor (Vif) to target specific human A3s for proteasomal degradation. Vif recruits cellular transcription cofactor CBF-β and Cullin-5 (CUL5) RING E3 ubiquitin ligase to bind different A3s distinctively, but how this is accomplished remains unclear in the absence of the atomic structure of the complex. Here, we present the cryo-EM structures of HIV-1 Vif in complex with human A3H, CBF-β and components of CUL5 ubiquitin ligase (CUL5, ELOB, and ELOC). Vif nucleates the entire complex by directly binding four human proteins, A3H, CBF-β, CUL5, and ELOC. The structures reveal a large interface area between A3H and Vif, primarily mediated by an α-helical side of A3H and a five-stranded β-sheet of Vif. This A3H-Vif interface unveils the basis for sensitivity-modulating polymorphism of both proteins, including a previously reported gain-of-function mutation in Vif isolated from HIV/AIDS patients. Our structural and functional results provide insights into the remarkable interplay between HIV and humans and would inform development efforts for anti-HIV therapeutics.

Indexed as

Acquired Immunodeficiency SyndromeHIV-1AminohydrolasesAntiviral AgentsCullin ProteinsCytidine DeaminaseHumansUbiquitin-Protein LigasesAminohydrolasesAntiviral AgentsAPOBEC3H protein, humanCUL5 protein, humanCullin ProteinsCytidine DeaminaseUbiquitin-Protein Ligases

Identifiers

PMID37640699
PMCPMC10462622
OpenAlexW4386224839

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.