Evidence map›Paper›PMID 37639620›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2023

Self-supervised machine learning using adult inpatient data produces effective models for pediatric clinical prediction tasks.

Joshua Lemmon, Lin Lawrence Guo, Ethan Steinberg, Keith E Morse, Scott Lanyon Fleming, Catherine Aftandilian, Stephen R Pfohl, Jose D Posada, Nigam Shah, Jason Fries and 1 more

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Joshua LemmonProgram in Child Health Evaluative Sciences, The Hospital for Sick Children, Toronto, ON M5G1X8, Canada.
Lin Lawrence GuoProgram in Child Health Evaluative Sciences, The Hospital for Sick Children, Toronto, ON M5G1X8, Canada.
Ethan SteinbergStanford Center for Biomedical Informatics Research, Stanford University, Palo Alto, CA 94305, United States.
Keith E MorseDivision of Pediatric Hospital Medicine, Department of Pediatrics, Stanford University, Palo Alto, CA 94304, United States.ORCID 0000-0002-8307-1642
Scott Lanyon FlemingStanford Center for Biomedical Informatics Research, Stanford University, Palo Alto, CA 94305, United States.
Catherine AftandilianDivision of Hematology/Oncology, Department of Pediatrics, Stanford University, Palo Alto, CA 94304, United States.
Stephen R PfohlGoogle Research, Mountain View, CA 94043, United States.
Jose D PosadaUniversidad del Norte, Barranquilla 081007, Colombia.
Nigam ShahStanford Center for Biomedical Informatics Research, Stanford University, Palo Alto, CA 94305, United States.ORCID 0000-0001-9385-7158
Jason FriesStanford Center for Biomedical Informatics Research, Stanford University, Palo Alto, CA 94305, United States.
Lillian SungProgram in Child Health Evaluative Sciences, The Hospital for Sick Children, Toronto, ON M5G1X8, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveDevelopment of electronic health records (EHR)-based machine learning models for pediatric inpatients is challenged by limited training data. Self-supervised learning using adult data may be a promising approach to creating robust pediatric prediction models. The primary objective was to determine whether a self-supervised model trained in adult inpatients was noninferior to logistic regression models trained in pediatric inpatients, for pediatric inpatient clinical prediction tasks. MATERIALS AND

methodsThis retrospective cohort study used EHR data and included patients with at least one admission to an inpatient unit. One admission per patient was randomly selected. Adult inpatients were 18 years or older while pediatric inpatients were more than 28 days and less than 18 years. Admissions were temporally split into training (January 1, 2008 to December 31, 2019), validation (January 1, 2020 to December 31, 2020), and test (January 1, 2021 to August 1, 2022) sets. Primary comparison was a self-supervised model trained in adult inpatients versus count-based logistic regression models trained in pediatric inpatients. Primary outcome was mean area-under-the-receiver-operating-characteristic-curve (AUROC) for 11 distinct clinical outcomes. Models were evaluated in pediatric inpatients.

resultsWhen evaluated in pediatric inpatients, mean AUROC of self-supervised model trained in adult inpatients (0.902) was noninferior to count-based logistic regression models trained in pediatric inpatients (0.868) (mean difference = 0.034, 95% CI=0.014-0.057; P < .001 for noninferiority and P = .006 for superiority).

conclusionsSelf-supervised learning in adult inpatients was noninferior to logistic regression models trained in pediatric inpatients. This finding suggests transferability of self-supervised models trained in adult patients to pediatric patients, without requiring costly model retraining.

Indexed as

InpatientsMachine LearningAdultChildElectronic Health RecordsHumansRetrospective StudiesSupervised Machine Learningelectronic health recordsfoundation modelmachine learningmodel robustnessself-supervised learningtransfer learning

Identifiers

PMID37639620
PMCPMC10654865

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.