Evidence map›Paper›PMID 37639593›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2023

Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3-FOXO1 in rhabdomyosarcoma.

Martyna W Sroka, Damianos Skopelitis, Marit W Vermunt, Jonathan B Preall, Osama El Demerdash, Larissa M N de Almeida, Kenneth Chang, Raditya Utama, Berkley Gryder, Giuseppina Caligiuri and 13 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. The role(s) of NF-Y in development and differentiation.Cell death and differentiation · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3-FOXO1 in rhabdomyosarcoma.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 8 institutions in 2 countries.

Martyna W SrokaCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.ORCID 0000-0001-7996-386X
Damianos SkopelitisCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.ORCID 0000-0003-4724-5462
Marit W VermuntDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA 19104.ORCID 0000-0002-3570-1558
Jonathan B PreallCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Osama El DemerdashCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Larissa M N de AlmeidaCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.ORCID 0000-0002-3477-8107
Kenneth ChangCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Raditya UtamaCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Berkley GryderDepartment of Genetics and Genome Sciences, Case Western Reserve University, Cleveland, OH 44106.ORCID 0000-0003-0130-2302
Giuseppina CaligiuriCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Diqiu RenDepartment of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Benan NalbantCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Joseph P MilazzoCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.ORCID 0009-0000-8320-4794
David A TuvesonCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.ORCID 0000-0002-8017-2712
Alexander DobinCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.
Scott W HiebertDepartment of Biochemistry, Vanderbilt University School of Medicine, Nashville, TN 37232.
Kristy R StengelDepartment of Cell Biology, Albert Einstein College of Medicine, New York, NY 10461.
Roberto MantovaniDipartimento di Bioscienze, Università degli Studi di Milano, 20133 Milano, Italy.
Javed KhanGenetics Branch, National Cancer Institute, NIH, Bethesda, MD 20892.
Rahul M KohliDepartment of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-7689-5678
Junwei ShiDepartment of Cancer Biology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.
Gerd A BlobelDivision of Hematology, The Children's Hospital of Philadelphia, Philadelphia, PA 19104.ORCID 0000-0002-0714-9612
Christopher R VakocCold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724.ORCID 0000-0002-1158-7180
Cold Spring Harbor Laboratory · USUniversity of Pennsylvania · USChildren's Hospital of Philadelphia · USAlbert Einstein College of Medicine · USCase Western Reserve University · USNational Cancer Institute · USUniversity of Milan · ITVanderbilt University · US

Funding

Single-Cell Biology Shared ResourceP30CA045508 · NCI · COLD SPRING HARBOR LABORATORY · PI John Edward Moses · 1987 to 2026
$118.9M
VIRAL TRANSACTIVATIONP01CA013106 · NCI · COLD SPRING HARBOR LABORATORY · PI Camila dos Santos · 1985 to 2026
$116.8M
Elucidating the function of PAX3-FOXO1 in rhabdomyosarcoma with molecular reporters and next-generation genome editingR21CA245859 · NCI · COLD SPRING HARBOR LABORATORY · PI VAKOC, CHRISTOPHER · 2020 to 2021
$494k
NCI NIH HHS P01 CA013106NCI NIH HHS P30 CA045508NCI NIH HHS R21 CA245859
6 · The paper itself

Abstract

Recurrent chromosomal rearrangements found in rhabdomyosarcoma (RMS) produce the PAX3-FOXO1 fusion protein, which is an oncogenic driver and a dependency in this disease. One important function of PAX3-FOXO1 is to arrest myogenic differentiation, which is linked to the ability of RMS cells to gain an unlimited proliferation potential. Here, we developed a phenotypic screening strategy for identifying factors that collaborate with PAX3-FOXO1 to block myo-differentiation in RMS. Unlike most genes evaluated in our screen, we found that loss of any of the three subunits of the Nuclear Factor Y (NF-Y) complex leads to a myo-differentiation phenotype that resembles the effect of inactivating PAX3-FOXO1. While the transcriptomes of NF-Y- and PAX3-FOXO1-deficient RMS cells bear remarkable similarity to one another, we found that these two transcription factors occupy nonoverlapping sites along the genome: NF-Y preferentially occupies promoters, whereas PAX3-FOXO1 primarily binds to distal enhancers. By integrating multiple functional approaches, we map the

Indexed as

RhabdomyosarcomaCCAAT-Binding FactorCell DifferentiationChromosome AberrationsTranscription FactorsCCAAT-Binding Factornuclear factor YTranscription Factorsmusclemyo-differentiationNF-YPAX3–FOXO1rhabdomyosarcoma

Identifiers

PMID37639593
PMCPMC10483665
OpenAlexW4386211820

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.