Evidence map›Paper›PMID 37635351›Full record

ArticleCell reports2023

A comparative analysis of microglial inducible Cre lines.

Travis E Faust, Philip A Feinberg, Ciara O'Connor, Riki Kawaguchi, Andrew Chan, Hayley Strasburger, Maximilian Frosch, Margaret A Boyle, Takahiro Masuda, Lukas Amann and 4 more

Abstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

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8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Travis E FaustDepartment of Neurobiology, Brudnick Neuropsychiatric Research Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Philip A FeinbergDepartment of Neurobiology, Brudnick Neuropsychiatric Research Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Ciara O'ConnorDepartment of Neurobiology, Brudnick Neuropsychiatric Research Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Riki KawaguchiDepartment of Psychiatry and Neurology, UCLA, Los Angeles, CA 90095, USA.
Andrew ChanDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Hayley StrasburgerDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA.
Maximilian FroschInstitute of Neuropathology, Medical Faculty, University of Freiburg, 79106 Freiburg, Germany.
Margaret A BoyleDepartment of Neurobiology, Brudnick Neuropsychiatric Research Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA.
Takahiro MasudaInstitute of Neuropathology, Medical Faculty, University of Freiburg, 79106 Freiburg, Germany; Division of Molecular Neuroimmunology, Medical Institute of Bioregulation, Kyushu University, Fukuoka 812-8582, Japan.
Lukas AmannInstitute of Neuropathology, Medical Faculty, University of Freiburg, 79106 Freiburg, Germany.
Klaus-Peter KnobelochInstitute of Neuropathology, Medical Faculty, University of Freiburg, 79106 Freiburg, Germany; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.
Marco PrinzInstitute of Neuropathology, Medical Faculty, University of Freiburg, 79106 Freiburg, Germany; Center for Basics in NeuroModulation (NeuroModulBasics), Faculty of Medicine, University of Freiburg, 79106 Freiburg, Germany; Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg, Germany.
Anne SchaeferDepartment of Neuroscience, Icahn School of Medicine at Mount Sinai, New York, NY 10029, USA; Max Planck Institute for Biology of Ageing, 50931 Cologne, Germany.
Dorothy P SchaferDepartment of Neurobiology, Brudnick Neuropsychiatric Research Institute, University of Massachusetts Chan Medical School, Worcester, MA 01605, USA. Electronic address: dorothy.schafer@umassmed.edu.

Funding

Transcription Factors in Stimulant and Opioid ActionP01DA047233 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Paul J. Kenny · 2019 to 2026
$16.5M
Neuroprotective signaling and transcriptional pathways in microglia associated with Alzheimer's diseaseR01AG072489 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ALISON M GOATE, Anne Schaefer · 2022 to 2026
$6.3M
Microglia-dependent mechanisms governing neural circuit plasticityR01MH113743 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI Dorothy Patricia Schafer · 2017 to 2026
$4.9M
Age-dependent activation of microglia inflammatory state and its epigenetic modulationRF1AG068558 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHAEFER, ANNE, TARAKHOVSKY, ALEXANDER · 2020 to 2020
$3.0M
Cognate microglia-neuron interaction and its role in inflammationDP2MH100012 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHAEFER, ANNE · 2012 to 2012
$2.5M
How Do Synaptic Connections Change in Demyelinating Disease?R01NS117533 · NINDS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHAFER, DOROTHY PATRICIA · 2021 to 2025
$2.2M
Microglia mediated suppression of dopamine induced neuronal responses and behaviorR01MH118329 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHAEFER, ANNE · 2019 to 2023
$2.1M
Transcriptional Control of Microglia Diversification and InflammationR01NS106721 · NINDS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHAEFER, ANNE, TARAKHOVSKY, ALEXANDER · 2020 to 2024
$2.0M
Dissecting the impact of senescence on microglia function and neurodegenerationRF1AG068281 · NIA · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHAFER, DOROTHY PATRICIA, ZHANG, HONG · 2020 to 2020
$1.7M
Age-dependent activation of microglia inflammatory state and its epigenetic modulationR01AG068558 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SCHAEFER, ANNE, TARAKHOVSKY, ALEXANDER · 2024 to 2024
$726k
Exploring Novel Activity-Dependent Mechanisms Regulating Microglia-Synapse InteractionsR21MH115353 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHAEFER, ANNE, SCHAFER, DOROTHY PATRICIA · 2017 to 2018
$480k
Dopamine signaling as a cognate microglia-neuron interaction in the striatumF31MH124400 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI STRASBURGER, HAYLEY · 2021 to 2023
$101k
NIA NIH HHS R01 AG068558NIA NIH HHS R01 AG072489NIA NIH HHS RF1 AG068281NIA NIH HHS RF1 AG068558NIDA NIH HHS P01 DA047233NIMH NIH HHS DP2 MH100012NIMH NIH HHS F31 MH124400NIMH NIH HHS R01 MH113743NIMH NIH HHS R01 MH118329NIMH NIH HHS R21 MH115353NINDS NIH HHS R01 NS106721NINDS NIH HHS R01 NS117533
6 · The paper itself

Abstract

Cre/loxP technology has revolutionized genetic studies and allowed for spatial and temporal control of gene expression in specific cell types. Microglial biology has particularly benefited because microglia historically have been difficult to transduce with virus or electroporation methods for gene delivery. Here, we investigate five of the most widely available microglial inducible Cre lines. We demonstrate varying degrees of recombination efficiency, cell-type specificity, and spontaneous recombination, depending on the Cre line and inter-loxP distance. We also establish best practice guidelines and protocols to measure recombination efficiency, particularly in microglia. There is increasing evidence that microglia are key regulators of neural circuits and major drivers of a broad range of neurological diseases. Reliable manipulation of their function in vivo is of utmost importance. Identifying caveats and benefits of all tools and implementing the most rigorous protocols are crucial to the growth of the field and the development of microglia-based therapeutics.

Indexed as

IntegrasesMicrogliaAnimalsGene Transfer TechniquesMiceMice, TransgenicCre recombinaseIntegrasesCP: NeuroscienceCreERCre/loxPmicrogliarecombination

Identifiers

PMID37635351
PMCPMC10591718

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.