Evidence map›Paper›PMID 37635251›Full record

ArticleRespiratory research2023

A comparative study of in vitro air-liquid interface culture models of the human airway epithelium evaluating cellular heterogeneity and gene expression at single cell resolution.

Rachel A Prescott, Alec P Pankow, Maren de Vries, Keaton M Crosse, Roosheel S Patel, Mark Alu, Cynthia Loomis, Victor Torres, Sergei Koralov, Ellie Ivanova and 2 more

Abstract read
In one paragraph

Article in Respiratory research, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
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  4. Review
  5. Host-pathogen-immune interactions in an air-liquid interface airway model.Frontiers in cellular and infection microbiology · 2026
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  6. Article
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  11. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Rachel A Prescott *Department of Microbiology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Alec P Pankow *Department of Microbiology, The Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Maren de Vries *Department of Microbiology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Keaton M CrosseDepartment of Microbiology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Roosheel S PatelDepartment of Microbiology, The Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA.
Mark AluDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Cynthia LoomisDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Victor TorresDepartment of Microbiology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Sergei KoralovDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Ellie IvanovaDepartment of Pathology, NYU Grossman School of Medicine, New York, NY, 10016, USA.
Meike DittmannDepartment of Microbiology, NYU Grossman School of Medicine, New York, NY, 10016, USA. meike.dittmann@nyulangone.org.
Brad R RosenbergDepartment of Microbiology, The Icahn School of Medicine at Mount Sinai, New York, NY, 10029, USA. brad.rosenberg@mssm.edu.

Funding

Dynamic regulatory network models of human response to influenza virusU01AI150748 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI MARAZZI, IVAN, MIRALDI, EMILY · 2020 to 2024
$5.8M
Next Generation Resolution of Antiviral Gene NetworksR01AI151029 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Dusan Bogunovic, Brad Rosenberg · 2020 to 2026
$4.2M
Host-pathogen interactions during hospital adaptation of MRSAR01AI137336 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHOPSIN, BO, YANAI, ITAI · 2019 to 2022
$3.3M
ELF1 - Molecular mechanisms of a novel transcription factor with broad antiviral activityR01AI143639 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI WEISER, JEFFREY NEAL · 2019 to 2023
$2.5M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
NIAID NIH HHS R01 AI137336NIAID NIH HHS R01 AI143639NIAID NIH HHS R01 AI151029NIAID NIH HHS U01 AI150748NIH HHS S10 OD026880
6 · The paper itself

Abstract

backgroundThe airway epithelium is composed of diverse cell types with specialized functions that mediate homeostasis and protect against respiratory pathogens. Human airway epithelial (HAE) cultures at air-liquid interface are a physiologically relevant in vitro model of this heterogeneous tissue and have enabled numerous studies of airway disease. HAE cultures are classically derived from primary epithelial cells, the relatively limited passage capacity of which can limit experimental methods and study designs. BCi-NS1.1, a previously described and widely used basal cell line engineered to express hTERT, exhibits extended passage lifespan while retaining the capacity for differentiation to HAE. However, gene expression and innate immune function in BCi-NS1.1-derived versus primary-derived HAE cultures have not been fully characterized.

methodsBCi-NS1.1-derived HAE cultures (n = 3 independent differentiations) and primary-derived HAE cultures (n = 3 distinct donors) were characterized by immunofluorescence and single cell RNA-Seq (scRNA-Seq). Innate immune functions were evaluated in response to interferon stimulation and to infection with viral and bacterial respiratory pathogens.

resultsWe confirm at high resolution that BCi-NS1.1- and primary-derived HAE cultures are largely similar in morphology, cell type composition, and overall gene expression patterns. While we observed cell-type specific expression differences of several interferon stimulated genes in BCi-NS1.1-derived HAE cultures, we did not observe significant differences in susceptibility to infection with influenza A virus and Staphylococcus aureus.

conclusionsTaken together, our results further support BCi-NS1.1-derived HAE cultures as a valuable tool for the study of airway infectious disease.

Indexed as

Epithelial CellsInterferonsCell DifferentiationEpitheliumGene ExpressionHumansInterferonsAir–liquid interface epithelial cultureAirway epitheliumInnate immunityRespiratory infectionSingle cell transcriptomics

Identifiers

PMID37635251
PMCPMC10464153

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.