Evidence map›Paper›PMID 37632234›Full record

ArticleJournal of the American Medical Informatics Association : JAMIA2023

A broadly applicable approach to enrich electronic-health-record cohorts by identifying patients with complete data: a multisite evaluation.

Jeffrey G Klann, Darren W Henderson, Michele Morris, Hossein Estiri, Griffin M Weber, Shyam Visweswaran, Shawn N Murphy

Abstract read
In one paragraph

Article in Journal of the American Medical Informatics Association : JAMIA, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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  7. Towards cross-application model-agnostic federated cohort discovery.Journal of the American Medical Informatics Association : JAMIA · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jeffrey G KlannDepartment of Medicine, Massachusetts General Hospital, Boston, MA 02114, United States.ORCID 0000-0003-2043-1601
Darren W HendersonInstitute of Biomedical Informatics, University of Kentucky, Lexington, KY 40506, United States.
Michele MorrisDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA 15260, United States.
Hossein EstiriDepartment of Medicine, Massachusetts General Hospital, Boston, MA 02114, United States.ORCID 0000-0002-0204-8978
Griffin M WeberBeth Israel Deaconess Medical Center, Boston, MA 02115, United States.ORCID 0000-0002-2597-881X
Shyam VisweswaranDepartment of Biomedical Informatics, University of Pittsburgh, Pittsburgh, PA 15260, United States.ORCID 0000-0002-2079-8684
Shawn N MurphyDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA 02115, United States.

Funding

ENACT: Translating Health Informatics Tools to Research and Clinical Decision MakingU24TR004111 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI STEVEN E REIS, SHYAM VISWESWARAN · 2022 to 2026
$23.3M
Temporal Phenotypes and Risk Models for the Post-COVID Syndrome and its sub-typesR01AI165535 · NIAID · MASSACHUSETTS GENERAL HOSPITAL · PI Hossein Estiri, SHAWN N MURPHY · 2022 to 2026
$4.1M
Biases introduced by filtering electronic health records for patients with "complete data"R01LM013345 · NLM · HARVARD MEDICAL SCHOOL · PI WEBER, GRIFFIN M · 2020 to 2023
$1.4M
NCATS NIH HHS U24 TR004111NIAID NIH HHS R01 AI165535NIH HHS R01 LM013345NIH HHS U24 TR004111NLM NIH HHS R01 LM013345
6 · The paper itself

Abstract

objectivePatients who receive most care within a single healthcare system (colloquially called a "loyalty cohort" since they typically return to the same providers) have mostly complete data within that organization's electronic health record (EHR). Loyalty cohorts have low data missingness, which can unintentionally bias research results. Using proxies of routine care and healthcare utilization metrics, we compute a per-patient score that identifies a loyalty cohort. MATERIALS AND

methodsWe implemented a computable program for the widely adopted i2b2 platform that identifies loyalty cohorts in EHRs based on a machine-learning model, which was previously validated using linked claims data. We developed a novel validation approach, which tests, using only EHR data, whether patients returned to the same healthcare system after the training period. We evaluated these tools at 3 institutions using data from 2017 to 2019.

resultsLoyalty cohort calculations to identify patients who returned during a 1-year follow-up yielded a mean area under the receiver operating characteristic curve of 0.77 using the original model and 0.80 after calibrating the model at individual sites. Factors such as multiple medications or visits contributed significantly at all sites. Screening tests' contributions (eg, colonoscopy) varied across sites, likely due to coding and population differences. DISCUSSION: This open-source implementation of a "loyalty score" algorithm had good predictive power. Enriching research cohorts by utilizing these low-missingness patients is a way to obtain the data completeness necessary for accurate causal analysis.

conclusioni2b2 sites can use this approach to select cohorts with mostly complete EHR data.

Indexed as

AlgorithmsElectronic Health RecordsDelivery of Health CareElectronicsHumansMachine Learningclinical data warehousingclinical research informaticsdata completenesselectronic health recordsi2b2loyalty cohort

Identifiers

PMID37632234
PMCPMC10654861

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.