Evidence map›Paper›PMID 37631182›Full record

ArticlePlants (Basel, Switzerland)2023

Development of a High-Quality/Yield Long-Read Sequencing-Adaptable DNA Extraction Method for Crop Seeds.

Naohiro Shioya, Eri Ogiso-Tanaka, Masanori Watanabe, Toyoaki Anai, Tomoki Hoshino

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Naohiro ShioyaLaboratory of Crop Breeding, Graduate School of Agricultural Sciences, Yamagata University, 1-23 Wakaba-Machi, Tsuruoka 997-8555, Yamagata, Japan.
Eri Ogiso-TanakaCenter for Molecular Biodiversity Research, National Museum of Nature and Science, 4-1-1 Amakubo, Tsukuba 305-0005, Ibaraki, Japan.ORCID 0000-0002-7655-3408
Masanori WatanabeFaculty of Agriculture, Yamagata University, 1-23 Wakaba-Machi, Tsuruoka 997-8555, Yamagata, Japan.
Toyoaki AnaiLaboratory of Agroecology, Faculty of Agriculture, Kyushu University, 744 Motooka, Nishi-Ku, Fukuoka 819-0395, Fukuoka, Japan.
Tomoki HoshinoLaboratory of Crop Breeding, Graduate School of Agricultural Sciences, Yamagata University, 1-23 Wakaba-Machi, Tsuruoka 997-8555, Yamagata, Japan.ORCID 0000-0001-5630-4685

Funding

Japan Society for the Promotion of Science 17K08164Japan Society for the Promotion of Science 21K05868Y.U. -C.O.E. (M), (C)
6 · The paper itself

Abstract

Genome sequencing is important for discovering critical genes in crops and improving crop breeding efficiency. Generally, fresh, young leaves are used for DNA extraction from plants. However, seeds, the storage form, are more efficient because they do not require cultivation and can be ground at room temperature. Yet, only a few DNA extraction kits or methods suitable for seeds have been developed to date. In this study, we introduced an improved (IMP) Boom method that is relatively low-cost, simple to operate, and yields high-quality DNA that can withstand long-read sequencing. The method successfully extracted approximately 8 µg of DNA per gram of seed weight from soybean seeds at an average concentration of 48.3 ng/µL, approximately 40-fold higher than that extracted from seeds using a common extraction method kit. The A

Indexed as

boom methodDNA extractionlong-read sequencingseedsoybean

Identifiers

PMID37631182
PMCPMC10457885

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.