Evidence map›Paper›PMID 37630492›Full record

ArticleMicroorganisms2023

Metagenomic Analysis of Antarctic Biocrusts Unveils a Rich Range of Cold-Shock Proteins.

Ekaterina Pushkareva, Josef Elster, Burkhard Becker

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Ekaterina PushkarevaDepartment of Biology, Botanical Institute, University of Cologne, Zulpicher Str. 47B, 50674 Cologne, Germany.ORCID 0000-0002-7200-1681
Josef ElsterInstitute of Botany, Academy of Sciences of the Czech Republic, Dukelska 135, 37982 Trebon, Czech Republic.ORCID 0000-0002-4535-5636
Burkhard BeckerDepartment of Biology, Botanical Institute, University of Cologne, Zulpicher Str. 47B, 50674 Cologne, Germany.ORCID 0000-0002-7965-1396
University of Cologne · DECzech Academy of Sciences · CZ

Funding

Czech Academy of Sciences 67985939Deutsche Forschungsgemeinschaft BE1779/23-1
6 · The paper itself

Abstract

Microorganisms inhabiting Antarctic biocrusts develop several strategies to survive extreme environmental conditions such as severe cold and drought. However, the knowledge about adaptations of biocrusts microorganisms are limited. Here, we applied metagenomic sequencing to study biocrusts from east Antarctica. Biocrusts were dominated by cyanobacteria, actinobacteria and proteobacteria. Furthermore, the results provided insights into the presence and abundance of cold shock proteins (Csp), cold shock domain A proteins (CsdA), and antifreeze proteins (AFP) in these extreme environments. The metagenomic analysis revealed a high number of CsdA across the samples. The majority of the Csp recorded in the studied biocrusts were Csp A, C, and E. In addition, CsdA, Csp, and AFP primarily originated from proteobacteria and actinobacteria.

Indexed as

Antarcticaantifreeze proteinsbiocrustscold-shock domaincold-shock proteinsmetagenomic sequencing

Identifiers

PMID37630492
PMCPMC10459675
OpenAlexW4385400402

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.