Evidence map›Paper›PMID 37628576›Full record

ArticleGenes2023

LRP5, SLC6A3, and SOX10 Expression in Conventional Ameloblastoma.

Lorena Correa-Arzate, Javier Portilla-Robertson, Josué Orlando Ramírez-Jarquín, Luis Fernando Jacinto-Alemán, Claudia Patricia Mejía-Velázquez, Francisco Germán Villanueva-Sánchez, Mariana Rodríguez-Vázquez

Open access · goldAbstract read
In one paragraph

Article in Genes, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Lorena Correa-ArzateDepartment of Oral Medicine and Pathology, Postgraduate Division, Dental School, National Autonomous University of Mexico, Mexico City 04510, Mexico.
Javier Portilla-RobertsonDepartment of Oral Medicine and Pathology, Postgraduate Division, Dental School, National Autonomous University of Mexico, Mexico City 04510, Mexico.ORCID 0000-0002-4924-7376
Josué Orlando Ramírez-JarquínNeurosciences Division, Cellular Physiology Institute, National Autonomous University of Mexico, Mexico City 04510, Mexico.ORCID 0000-0001-7574-8724
Luis Fernando Jacinto-AlemánDepartment of Oral Medicine and Pathology, Postgraduate Division, Dental School, National Autonomous University of Mexico, Mexico City 04510, Mexico.ORCID 0000-0002-0384-5581
Claudia Patricia Mejía-VelázquezDepartment of Oral Medicine and Pathology, Postgraduate Division, Dental School, National Autonomous University of Mexico, Mexico City 04510, Mexico.
Francisco Germán Villanueva-SánchezOral and Maxillofacial Pathology, Dental School, ENES-Leon, National Autonomous University of Mexico, Guanajuato 37684, Mexico.ORCID 0000-0003-3567-5393
Mariana Rodríguez-VázquezInfectomic and Molecular Pathogenesis Department, CINVESTAV, National Polytechnic Institute, Mexico City 07738, Mexico.
Universidad Nacional Autónoma de México · MXInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cell proliferation and invasion are characteristic of many tumors, including ameloblastoma, and are important features to target in possible future therapeutic applications.

objectiveThe objective of this study was the identification of key genes and inhibitory drugs related to the cell proliferation and invasion of ameloblastoma using bioinformatic analysis.

methodsThe H10KA_07_38 gene profile database was analyzed by Rstudio and ShinyGO Gene Ontology enrichment. String, Cytoscape-MCODE, and Kaplan-Meier plots were generated, which were subsequently validated by RT-qPCR relative expression and immunoexpression analyses. To propose specific inhibitory drugs, a bioinformatic search using Drug Gene Budger and DrugBank was performed.

resultsA total of 204 significantly upregulated genes were identified. Gene ontology enrichment analysis identified four pathways related to cell proliferation and cell invasion. A total of 37 genes were involved in these pathways, and 11 genes showed an MCODE score of ≥0.4; however, only SLC6A3, SOX10, and LRP5 were negatively associated with overall survival (HR = 1.49 (

conclusionsWe identify LRP5, SLC6A3, and SOX10 as potentially important genes related to cell proliferation and invasion in the pathogenesis of ameloblastomas, along with both parthenolide and vorinostat as inhibitory drugs that could be further investigated for the development of novel therapeutic approaches against ameloblastoma.

Indexed as

AmeloblastomaCell ProliferationComputational BiologyDopamine Plasma Membrane Transport ProteinsHumansLow Density Lipoprotein Receptor-Related Protein-5SesquiterpenesSOXE Transcription FactorsVorinostatDopamine Plasma Membrane Transport ProteinsLow Density Lipoprotein Receptor-Related Protein-5LRP5 protein, humanparthenolideSesquiterpenesSLC6A3 protein, humanSOX10 protein, humanSOXE Transcription FactorsVorinostatameloblastomabioinformaticsgene expression profilingLRP5microarray analysisSLC6A3SOX10

Identifiers

PMID37628576
PMCPMC10453908
OpenAlexW4385282068

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.