Evidence map›Paper›PMID 37627077›Full record

ArticleCancers2023

Unlocking the Potential of Kinase Targets in Cancer: Insights from CancerOmicsNet, an AI-Driven Approach to Drug Response Prediction in Cancer.

Manali Singha, Limeng Pu, Gopal Srivastava, Xialong Ni, Brent A Stanfield, Ifeanyi K Uche, Paul J F Rider, Konstantin G Kousoulas, J Ramanujam, Michal Brylinski

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 29 citations in OpenAlex.

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  15. Kinome-Wide Virtual Screening by Multi-Task Deep Learning.International journal of molecular sciences · 2024
    Article
  16. Article
  17. Hesperidin increases theJournal of advanced pharmaceutical technology & research
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Manali SinghaDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Limeng PuCenter for Computation and Technology, Louisiana State University, Baton Rouge, LA 70803, USA.
Gopal SrivastavaDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Xialong NiDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.
Brent A StanfieldDepartment of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA 70803, USA.ORCID 0000-0002-0966-9662
Ifeanyi K UcheDepartment of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA 70803, USA.
Paul J F RiderDepartment of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA 70803, USA.
Konstantin G KousoulasDepartment of Pathobiological Sciences, School of Veterinary Medicine, Louisiana State University, Baton Rouge, LA 70803, USA.
J RamanujamCenter for Computation and Technology, Louisiana State University, Baton Rouge, LA 70803, USA.ORCID 0000-0002-4349-1327
Michal BrylinskiDepartment of Biological Sciences, Louisiana State University, Baton Rouge, LA 70803, USA.ORCID 0000-0002-6204-2869
Louisiana State University · US

Funding

Combining structure-based network biology and heterogeneous computing for rational drug repositioning and polypharmacologyR35GM119524 · NIGMS · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI BRYLINSKI, MICHAL · 2016 to 2020
$962k
NIGMS NIH HHS P20GM12188NIGMS NIH HHS R35GM119524
6 · The paper itself

Abstract

Deregulated protein kinases are crucial in promoting cancer cell proliferation and driving malignant cell signaling. Although these kinases are essential targets for cancer therapy due to their involvement in cell development and proliferation, only a small part of the human kinome has been targeted by drugs. A comprehensive scoring system is needed to evaluate and prioritize clinically relevant kinases. We recently developed CancerOmicsNet, an artificial intelligence model employing graph-based algorithms to predict the cancer cell response to treatment with kinase inhibitors. The performance of this approach has been evaluated in large-scale benchmarking calculations, followed by the experimental validation of selected predictions against several cancer types. To shed light on the decision-making process of CancerOmicsNet and to better understand the role of each kinase in the model, we employed a customized saliency map with adjustable channel weights. The saliency map, functioning as an explainable AI tool, allows for the analysis of input contributions to the output of a trained deep-learning model and facilitates the identification of essential kinases involved in tumor progression. The comprehensive survey of biomedical literature for essential kinases selected by CancerOmicsNet demonstrated that it could help pinpoint potential druggable targets for further investigation in diverse cancer types.

Indexed as

cancerCancerOmicsNetdruggable targetsexplainable artificial intelligencekinase inhibitorsprotein kinasessaliency map

Identifiers

PMID37627077
PMCPMC10452340
OpenAlexW4385740997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.