Evidence map›Paper›PMID 37627037›Full record

ReviewBiology2023

An Updated Overview of Existing Cancer Databases and Identified Needs.

Brittany K Austin, Ali Firooz, Homayoun Valafar, Anna V Blenda

Open access · goldAbstract readReview
In one paragraph

Review in Biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.2field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Brittany K AustinDepartment of Biomedical Sciences, School of Medicine Greenville, University of South Carolina, Greenville, SC 29605, USA.
Ali FiroozDepartment of Computer Science and Engineering, College of Engineering and Computing, University of South Carolina, Columbia, SC 29208, USA.ORCID 0000-0001-5779-2086
Homayoun ValafarDepartment of Computer Science and Engineering, College of Engineering and Computing, University of South Carolina, Columbia, SC 29208, USA.ORCID 0000-0002-1581-3464
Anna V BlendaDepartment of Biomedical Sciences, School of Medicine Greenville, University of South Carolina, Greenville, SC 29605, USA.ORCID 0000-0001-7669-3120
University of South Carolina · USPrisma Health · US

Funding

National Institute of Health P20 RR-01646100Prisma Health Transformative seed grant
6 · The paper itself

Abstract

Our search of existing cancer databases aimed to assess the current landscape and identify key needs. We analyzed 71 databases, focusing on genomics, proteomics, lipidomics, and glycomics. We found a lack of cancer-related lipidomic and glycomic databases, indicating a need for further development in these areas. Proteomic databases dedicated to cancer research were also limited. To assess overall progress, we included human non-cancer databases in proteomics, lipidomics, and glycomics for comparison. This provided insights into advancements in these fields over the past eight years. We also analyzed other types of cancer databases, such as clinical trial databases and web servers. Evaluating user-friendliness, we used the FAIRness principle to assess findability, accessibility, interoperability, and reusability. This ensured databases were easily accessible and usable. Our search summary highlights significant growth in cancer databases while identifying gaps and needs. These insights are valuable for researchers, clinicians, and database developers, guiding efforts to enhance accessibility, integration, and usability. Addressing these needs will support advancements in cancer research and benefit the wider cancer community.

Indexed as

cancerclinical trialsdatabasegenomicglycomiclipidomicproteomic

Identifiers

PMID37627037
PMCPMC10452211
OpenAlexW4386049676

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.