ArticleNature communications2023
Comparative genomic analyses reveal the genetic basis of the yellow-seed trait in Brassica napus.
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Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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19citing papers in PubMed
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19 citing papers in PubMed, 31 citations in OpenAlex.
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- Integrated multi-omics analysis reveals candidate genes for cuticular wax biosynthesis and molecular characteristics of a glossy mutant in rapeseed under natural drought stress.Frontiers in plant science · 2026Article
- Comprehensive analysis of GGCT genes in u's triangle Brassica species: insights into abiotic stress responses and potential association of BnaGGCT11/26 with seed weight.BMC plant biology · 2025Article
- Special Issue: "Molecular Genetics and Plant Breeding, 5th Edition".International journal of molecular sciences · 2025Article
- Phylogenetic networks empower biodiversity research.Proceedings of the National Academy of Sciences of the United States of America · 2025Article
- Integrating genome assembly, structural variation map construction and GWAS reveal the impact of SVs on agronomic traits of Brassica napus.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Genome-Wide Identification and Functional Characterization of the BAHD Acyltransferase Gene Family inPlants (Basel, Switzerland) · 2025Article
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- Pan-genome analysis of the R2R3-MYB genes family inFrontiers in plant science · 2025Article
- Chromosome-scale genome assembly of Astragalus membranaceus using PacBio and Hi-C technologies.Scientific data · 2024Article
- A complete reference genome of broomcorn millet.Scientific data · 2024Article
- Potential Regulatory Networks and Heterosis for Flavonoid and Terpenoid Contents in Pak Choi: Metabolomic and Transcriptome Analyses.International journal of molecular sciences · 2024Article
- Comparative Transcriptomics Uncovers Upstream Factors RegulatingPlants (Basel, Switzerland) · 2024Article
- Identification of Yellow Seed Color Genes Using Bulked Segregant RNA Sequencing inInternational journal of molecular sciences · 2024Article
- Molecular evolution analysis of MYB5 in Brassicaceae with specific focus on seed coat color of Brassica napus.BMC plant biology · 2024Article
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Authors and funding
38 authors at 9 institutions in 4 countries.
Cunmin Qu *Engineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0003-2413-2350
Meichen Zhu *Engineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0001-8505-251X
Ran Hu *Engineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0009-0005-6150-7918
Yongchao Niu *The State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-9774-5417
Si Chen *Engineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-5841-3065
Huiyan Zhao *Engineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-1534-9091
Chengxiang LiDepartment of Biological Sciences, Faculty of Science, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0002-4594-4203
Zhen WangEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0003-1766-9096
Nengwen YinEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-9055-2030
Fujun SunEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0009-0001-6089-3969
Zhiyou ChenEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-9534-0088
Shulin ShenEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-7690-9769
Guoxia ShangNational Key Laboratory Breeding Base for Innovation and Utilization of Plateau Crop Germplasm, Academy of Agricultural and Forestry Sciences, Qinghai University, Xining, Qinghai, China.ORCID http://orcid.org/0000-0001-8029-0770
Yan ZhouEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.
Xingying YanEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.
Lijuan WeiEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0009-0001-8584-5568
Liezhao LiuEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0001-5781-6121
Bin YiNational Key Laboratory of Crop Genetic Improvement, National Center of Rapeseed Improvement in Wuhan, Huazhong Agricultural University, Wuhan, China.
Jinmin LianBiozeron Shenzhen, Inc, Shenzhen, China.ORCID http://orcid.org/0000-0002-2063-2086
Jiang LiBiozeron Shenzhen, Inc, Shenzhen, China.ORCID http://orcid.org/0000-0003-2099-8165
Zhanglin TangEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0009-0008-3195-9552
Ying LiangEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0001-9651-4564
Xinfu XuEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0003-0983-0222
Rui WangEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-7440-9197
Jiaming YinEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.
Huafang WanEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0002-6167-4821
Hai DuEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0003-4274-5724
Wei QianEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.
Yourong ChaiEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.ORCID http://orcid.org/0000-0001-6611-624X
Qingyuan ZhouEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.
Yajun HeEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China.
Silin ZhongThe State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-0198-7383
Xiao QiuDepartment of Food and Bioproduct Sciences, University of Saskatchewan, Saskatoon, Canada.
Hao YuDepartment of Biological Sciences, Faculty of Science, National University of Singapore, Singapore, Singapore.ORCID http://orcid.org/0000-0002-9778-8855
Hon-Ming LamThe State Key Laboratory of Agrobiotechnology and School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.ORCID http://orcid.org/0000-0002-6673-8740
Kun LuEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China. drlukun@swu.edu.cn.ORCID http://orcid.org/0000-0003-1370-8633
Fuyou FuAgriculture and Agri-Food Canada, Saskatoon Research Centre, 107 Science Place, Saskatoon, Canada. fufuyou@gmail.com.ORCID http://orcid.org/0000-0002-5020-4496
Jiana LiEngineering Research Center of South Upland Agriculture, Ministry of Education, College of Agronomy and Biotechnology, Southwest University, Chongqing, China. ljn1950@swu.edu.cn.ORCID http://orcid.org/0000-0002-1605-8528
Southwest University · CNChinese University of Hong Kong · HKAgriculture and Agri-Food Canada · CAHuazhong Agricultural University · CNNational University of Singapore · SGQinghai University · CNSouthwest University of Political Science & Law · CNTemasek Life Sciences Laboratory · SGUniversity of Saskatchewan · CA
Funding
No grant is acknowledged in the PubMed record.
Abstract
Yellow-seed trait is a desirable breeding characteristic of rapeseed (Brassica napus) that could greatly improve seed oil yield and quality. However, the underlying mechanisms controlling this phenotype in B. napus plants are difficult to discern because of their complexity. Here, we assemble high-quality genomes of yellow-seeded (GH06) and black-seeded (ZY821). Combining in-depth fine mapping of a quantitative trait locus (QTL) for seed color with other omics data reveal BnA09MYB47a, encoding an R2R3-MYB-type transcription factor, as the causal gene of a major QTL controlling the yellow-seed trait. Functional studies show that sequence variation of BnA09MYB47a underlies the functional divergence between the yellow- and black-seeded B. napus. The black-seed allele BnA09MYB47a
Indexed as
Brassica napusFlavonoidsGenomicsPhenotypePlant BreedingSeedsFlavonoids
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