Evidence map›Paper›PMID 37626025›Full record

ArticleNature communications2023

DNA methylation at the suppressor of cytokine signaling 3 (SOCS3) gene influences height in childhood.

Prachand Issarapu, Manisha Arumalla, Hannah R Elliott, Suraj S Nongmaithem, Alagu Sankareswaran, Modupeh Betts, Sara Sajjadi, Noah J Kessler, Swati Bayyana, Sohail R Mansuri and 16 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors at 12 institutions in 4 countries.

Prachand IssarapuGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.ORCID http://orcid.org/0000-0002-9636-0144
Manisha ArumallaGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.
Hannah R ElliottMRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0002-1500-3533
Suraj S NongmaithemGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.ORCID http://orcid.org/0000-0001-5390-0449
Alagu SankareswaranGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.ORCID http://orcid.org/0000-0003-1006-318X
Modupeh BettsMRC Unit The Gambia at The London School of Hygiene and Tropical Medicine (LSHTM), London, UK.ORCID http://orcid.org/0000-0003-0083-7487
Sara SajjadiGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.
Noah J KesslerDepartment of Genetics, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-2740-6663
Swati BayyanaGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.
Sohail R MansuriGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.
Maria DerakhshanMRC Unit The Gambia at The London School of Hygiene and Tropical Medicine (LSHTM), London, UK.
G V KrishnaveniEpidemiology Research Unit, CSI Holdsworth Memorial Hospital, Mysore, Karnataka, India.
Smeeta ShresthaGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India.ORCID http://orcid.org/0000-0002-6560-4230
Kalyanaraman KumaranEpidemiology Research Unit, CSI Holdsworth Memorial Hospital, Mysore, Karnataka, India.
Chiara Di GravioDepartment of Biostatistics, Vanderbilt University Medical Center, Nashville, TN, USA.
Sirazul A SahariahCentre for the Study of Social Change, Mumbai, Maharashtra, India.
Eleanor SandersonMRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0001-5188-5775
Caroline L ReltonMRC Integrative Epidemiology Unit at the University of Bristol, Bristol, UK.ORCID http://orcid.org/0000-0003-2052-4840
Kate A WardMRC Unit The Gambia at The London School of Hygiene and Tropical Medicine (LSHTM), London, UK.
Sophie E MooreMRC Unit The Gambia at The London School of Hygiene and Tropical Medicine (LSHTM), London, UK.
Andrew M PrenticeMRC Unit The Gambia at The London School of Hygiene and Tropical Medicine (LSHTM), London, UK.ORCID http://orcid.org/0000-0001-5389-451X
Karen A LillycropSchool of Medicine, University of Southampton, Southampton, UK.
Caroline H D FallMRC Lifecourse Epidemiology Centre, University of Southampton, Southampton, UK.
Matt J SilverMRC Unit The Gambia at The London School of Hygiene and Tropical Medicine (LSHTM), London, UK. matt.silver@lshtm.ac.uk.ORCID http://orcid.org/0000-0002-3852-9677
Giriraj R ChandakGenomic Research on Complex Diseases (GRC-Group), CSIR-Centre for Cellular and Molecular Biology, Hyderabad, Telangana, India. chandakgrc@ccmb.res.in.ORCID http://orcid.org/0000-0002-3095-9453
EMPHASIS study group
Centre for Cellular and Molecular Biology · INMRC Unit the Gambia · GMSocial Change and Development · INMRC Lifecourse Epidemiology Unit · GBUniversity of Bristol · GBKing's College London · GBVanderbilt University Medical Center · USCSI Holdsworth Memorial Hospital · INLondon School of Hygiene & Tropical Medicine · GBNewcastle University · GBUniversity of Cambridge · GBUniversity of Southampton · GB

Funding

Medical Research Council MC_EX_MR/M01424X/1Medical Research Council MC_PC_21037Medical Research Council MC_PC_MR/R020183/1Medical Research Council MC_U123292701Medical Research Council MC_UP_1005/1Medical Research Council MC_UP_A620_1016Medical Research Council MC_UU_00011/5Medical Research Council MC_UU_00026/3Medical Research Council MC_UU_00032/4Medical Research Council MC_UU_12011/3Medical Research Council MR/M005186/1Medical Research Council MR/P012019/1Medical Research Council MR/T032863/1Medical Research Council MR/X021599/1Wellcome Trust
6 · The paper itself

Abstract

Human height is strongly influenced by genetics but the contribution of modifiable epigenetic factors is under-explored, particularly in low and middle-income countries (LMIC). We investigate links between blood DNA methylation and child height in four LMIC cohorts (n = 1927) and identify a robust association at three CpGs in the suppressor of cytokine signaling 3 (SOCS3) gene which replicates in a high-income country cohort (n = 879). SOCS3 methylation (SOCS3m)-height associations are independent of genetic effects. Mendelian randomization analysis confirms a causal effect of SOCS3m on height. In longitudinal analysis, SOCS3m explains a maximum 9.5% of height variance in mid-childhood while the variance explained by height polygenic risk score increases from birth to 21 years. Children's SOCS3m is associated with prenatal maternal folate and socio-economic status. In-vitro characterization confirms a regulatory effect of SOCS3m on gene expression. Our findings suggest epigenetic modifications may play an important role in driving child height in LMIC.

Indexed as

DNA MethylationSuppressor of Cytokine Signaling ProteinsChildCytokinesEpigenesis, GeneticEpigenomicsFemaleHumansPregnancySuppressor of Cytokine Signaling 3 ProteinCytokinesSOCS3 protein, humanSuppressor of Cytokine Signaling 3 ProteinSuppressor of Cytokine Signaling Proteins

Identifiers

PMID37626025
PMCPMC10457295
OpenAlexW4386168471

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.