Evidence map›Paper›PMID 37624000›Full record

ArticlePathogens (Basel, Switzerland)2023

Multiplex Real-Time RT-PCR Assays for Detection and Differentiation of Porcine Enteric Coronaviruses.

Christina M Lazov, Alice Papetti, Graham J Belsham, Anette Bøtner, Thomas Bruun Rasmussen, Maria Beatrice Boniotti

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Christina M LazovDTU Institute of Bioengineering, Technical University of Denmark, 2800 Kongens Lyngby, Denmark.ORCID 0000-0003-2852-970X
Alice PapettiIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia-Romagna, IZSLER, Reparto Tecnologie Biologiche Applicate, Via Bianchi, 9, 25124 Brescia, Italy.ORCID 0000-0003-4966-2884
Graham J BelshamDepartment of Veterinary and Animal Sciences, University of Copenhagen, 4 Stigboejlen, 1870 Frederiksberg, Denmark.ORCID 0000-0003-1187-4873
Anette BøtnerDepartment of Veterinary and Animal Sciences, University of Copenhagen, 4 Stigboejlen, 1870 Frederiksberg, Denmark.ORCID 0000-0002-0558-0222
Thomas Bruun RasmussenDepartment of Virus & Microbiological Special Diagnostics, Statens Serum Institut, 5 Artillerivej, 2300 Copenhagen, Denmark.ORCID 0000-0002-4241-1559
Maria Beatrice BoniottiIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia-Romagna, IZSLER, Reparto Tecnologie Biologiche Applicate, Via Bianchi, 9, 25124 Brescia, Italy.ORCID 0000-0001-6252-9848
University of Copenhagen · DKIstituto Zooprofilattico Sperimentale della Lombardia e dell'Emilia Romagna "Bruno Ubertini" · ITStatens Serum Institut · DK

Funding

Italian Ministry of Health PRC2014005
6 · The paper itself

Abstract

It is important to be able to detect and differentiate between distinct porcine enteric coronaviruses that can cause similar diseases. However, the existence of naturally occurring recombinant coronaviruses such as swine enteric coronavirus (SeCoV) can give misleading results with currently used diagnostic methods. Therefore, we have developed and validated three duplex real-time quantitative RT-PCR assays for the simultaneous detection of, and differentiation between, porcine epidemic diarrhea virus (PEDV) and SeCoV. Transmissible gastroenteritis virus (TGEV) is also detected by two out of these three assays. In addition, a novel triplex assay was set up that was able to detect and differentiate between these alphacoronaviruses and the porcine deltacoronavirus (PDCoV). The validated assays have low limits of detection, close to 100% efficiency, and were able to correctly identify the presence of PEDV and SeCoV in 55 field samples, whereas 20 samples of other pathogens did not give a positive result. Implementing one or more of these multiplex assays into the routine diagnostic surveillance for PEDV will ensure that the presence of SeCoV, TGEV, and PDCoV will not go unnoticed.

Indexed as

alphacoronavirusdeltacoronavirusporcine deltacoronavirus (PDCoV)porcine epidemic diarrhea virus (PEDV)recombinant virusRNAswine enteric coronavirus (SeCoV)transmissible gastroenteritis virus (TGEV)virus diagnosis

Identifiers

PMID37624000
PMCPMC10457881
OpenAlexW4385812919

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.