Evidence map›Paper›PMID 37620409›Full record

ArticleBritish journal of cancer2023

Synthetic viability induces resistance to immune checkpoint inhibitors in cancer cells.

Mingyue Liu, Qi Dong, Bo Chen, Kaidong Liu, Zhangxiang Zhao, Yuquan Wang, Shuping Zhuang, Huiming Han, Xingyang Shi, Zixin Jin and 2 more

Open access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Mingyue Liu *Department of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.ORCID 0000-0002-7284-3555
Qi Dong *Department of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Bo Chen *Department of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Kaidong LiuDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Zhangxiang ZhaoThe Sino-Russian Medical Research Center of Jinan University, The Institute of Chronic Disease of Jinan University, The First Affiliated Hospital of Jinan University, Guangzhou, China.ORCID 0000-0001-7467-7223
Yuquan WangDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Shuping ZhuangDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Huiming HanDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Xingyang ShiDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Zixin JinDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China.
Yang HuiDepartment of Biochemistry and Molecular Biology, Harbin Medical University, Harbin, China. huiyang79@126.com.
Yunyan GuDepartment of Systems Biology, College of Bioinformatics Science and Technology, Harbin Medical University, Harbin, China. guyunyan@ems.hrbmu.edu.cn.ORCID 0000-0001-5693-4126
Harbin Medical University · CNFirst Affiliated Hospital of Jinan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundImmune checkpoint inhibitors (ICI) have revolutionized the treatment for multiple cancers. However, most of patients encounter resistance. Synthetic viability (SV) between genes could induce resistance. In this study, we established SV signature to predict the efficacy of ICI treatment for melanoma.

methodsWe collected features and predicted SV gene pairs by random forest classifier. This work prioritized SV gene pairs based on CRISPR/Cas9 screens. SV gene pairs signature were constructed to predict the response to ICI for melanoma patients.

resultsThis study predicted robust SV gene pairs based on 14 features. Filtered by CRISPR/Cas9 screens, we identified 1,861 SV gene pairs, which were also related with prognosis across multiple cancer types. Next, we constructed the six SV pairs signature to predict resistance to ICI for melanoma patients. This study applied the six SV pairs signature to divide melanoma patients into high-risk and low-risk. High-risk melanoma patients were associated with worse response after ICI treatment. Immune landscape analysis revealed that high-risk melanoma patients had lower natural killer cells and CD8

conclusionsIn summary, the 14 features classifier accurately predicted robust SV gene pairs for cancer. The six SV pairs signature could predict resistance to ICI.

Indexed as

Immune Checkpoint InhibitorsMelanomaCD8-Positive T-LymphocytesHumansKiller Cells, NaturalRandom ForestImmune Checkpoint Inhibitors

Identifiers

PMID37620409
PMCPMC10575993
OpenAlexW4386119091

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.