Evidence map›Paper›PMID 37619819›Full record

ArticleThe Journal of allergy and clinical immunology2023

Longitudinal dynamics of the gut microbiome and metabolome in peanut allergy development.

Yoojin Chun, Alexander Grishin, Rebecca Rose, William Zhao, Zoe Arditi, Lingdi Zhang, Robert A Wood, A Wesley Burks, Stacie M Jones, Donald Y M Leung and 4 more

Open access · greenAbstract readMulticenter Study
In one paragraph

Article in The Journal of allergy and clinical immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
10.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it, 30 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Article
  5. Article
  6. Article
  7. Multiomic approaches for endotype discovery in allergy/immunology.The Journal of allergy and clinical immunology · 2025
    Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Immunomodulatory metabolites in IgE-mediated food allergy and oral immunotherapy outcomes based on metabolomic profiling.Pediatric allergy and immunology : official publication of the European Society of Pediatric Allergy and Immunology · 2024
    Article
  14. Gut microbiome in the first 1000 days and risk for childhood food allergy.Annals of allergy, asthma & immunology : official publication of the American College of Allergy, Asthma, & Immunology · 2024
    Review
  15. Article
  16. Feast for thought: A comprehensive review of food allergy 2021-2023.The Journal of allergy and clinical immunology · 2024
    Review
  17. The future of food allergy diagnosis.Frontiers in allergy · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 6 institutions in 1 country.

Yoojin ChunDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY.
Alexander GrishinDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY.
Rebecca RoseMetabolomics Core, New York University, New York, NY.
William ZhaoDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY.
Zoe ArditiDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY.
Lingdi ZhangDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY.
Robert A WoodDepartment of Pediatrics, Johns Hopkins University, Baltimore, Md.
A Wesley BurksDepartment of Pediatrics, University of North Carolina, Chapel Hill, NC.
Stacie M JonesDepartment of Pediatrics, University of Arkansas for Medical Sciences, Little Rock, Ark.
Donald Y M LeungDepartment of Pediatrics, National Jewish Health, Denver, Colo.
Drew R JonesMetabolomics Core, New York University, New York, NY.
Hugh A SampsonDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY.
Scott H SichererDepartment of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY.
Supinda BunyavanichDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY; Department of Pediatrics, Icahn School of Medicine at Mount Sinai, New York, NY. Electronic address: supinda@post.harvard.edu.
Icahn School of Medicine at Mount Sinai · USNew York Structural Biology Center · USJohns Hopkins University · USNational Jewish Health · USUniversity of Arkansas for Medical Sciences · USUniversity of North Carolina at Chapel Hill · US

Funding

CTSA INFRASTRUCTURE FOR PEDIATRIC RESEARCHUL1RR025780 · NCRR · UNIVERSITY OF COLORADO DENVER · PI SOKOL, RONALD J. · 2008 to 2011
$61.3M
Mechanistic CoreU19AI066738 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI SAMPSON, HUGH A · 2005 to 2016
$43.6M
Mount Sinai Institutes for Clinical and Translational SciencesUL1TR000067 · NCATS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SAMPSON, HUGH A · 2012 to 2014
$16.5M
Food Allergy Research Consortium and Statistical CenterU01AI066560 · NIAID · THE EMMES COMPANY, LLC · PI DAWSON, PETER RUSSELL, LINDBLAD, ROBERT · 2005 to 2016
$12.8M
UNC Clinical and Translational Science AwardUL1TR000083 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$11.6M
Arkansas Center for Clinical and Translational ResearchUL1TR000039 · NCATS · UNIV OF ARKANSAS FOR MED SCIS · PI BECK, CORNELIA MARIE, JAMES, LAURA P · 2012 to 2014
$10.0M
Institute for Clinical and Translational ResearchUL1TR000424 · NCATS · JOHNS HOPKINS UNIVERSITY · PI FORD, DANIEL ERNEST · 2012 to 2012
$6.0M
Gut Microbiome Dynamics in Peanut AllergyR01AI147028 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI BUNYAVANICH, SUPINDA · 2019 to 2022
$3.3M
Arkansas Center for Food Allergy Research (ArCOFAR)UM1AI130781 · NIAID · ARKANSAS CHILDREN'S HOSPITAL RES INST · PI JONES, STACIE M · 2017 to 2023
$1.6M
NCATS NIH HHS UL1 TR000039NCATS NIH HHS UL1 TR000067NCATS NIH HHS UL1 TR000083NCATS NIH HHS UL1 TR000424NCRR NIH HHS UL1 RR025780NIAID NIH HHS R01 AI147028NIAID NIH HHS U01 AI066560NIAID NIH HHS U19 AI066738NIAID NIH HHS UM1 AI130781
6 · The paper itself

Abstract

backgroundRising rates of peanut allergy (PA) motivate investigations of its development to inform prevention and therapy. Microbiota and the metabolites they produce shape food allergy risk.

objectiveWe sought to gain insight into gut microbiome and metabolome dynamics in the development of PA.

methodsWe performed a longitudinal, integrative study of the gut microbiome and metabolome of infants with allergy risk factors but no PA from a multicenter cohort followed through mid-childhood. We performed 16S rRNA sequencing, short chain fatty acid measurements, and global metabolome profiling of fecal samples at infancy and at mid-childhood.

resultsIn this longitudinal, multicenter sample (n = 122), 28.7% of infants developed PA by mid-childhood (mean age 9 years). Lower infant gut microbiome diversity was associated with PA development (P = .014). Temporal changes in the relative abundance of specific microbiota and gut metabolite levels significantly differed in children who developed PA. PA-bound children had different abundance trajectories of Clostridium sensu stricto 1 sp (false discovery rate (FDR) = 0.015) and Bifidobacterium sp (FDR = 0.033), with butyrate (FDR = 0.045) and isovalerate (FDR = 0.036) decreasing over time. Metabolites associated with PA development clustered within the histidine metabolism pathway. Positive correlations between microbiota, butyrate, and isovalerate and negative correlations with histamine marked the PA-free network.

conclusionThe temporal dynamics of the gut microbiome and metabolome in early childhood are distinct for children who develop PA. These findings inform our thinking on the mechanisms underlying and strategies for potentially preventing PA.

Indexed as

Gastrointestinal MicrobiomePeanut HypersensitivityButyratesChildChild, PreschoolFecesHumansInfantLongitudinal StudiesMetabolomeRNA, Ribosomal, 16SButyratesRNA, Ribosomal, 16Sfood allergyguthistaminehistidineintegratedmetabolomemicrobiomenetworkPeanut allergyshort chain fatty acid

Identifiers

PMID37619819
PMCPMC11440358
OpenAlexW4386070977

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.