Evidence map›Paper›PMID 37619707›Full record

ArticleJournal of molecular biology2023

Histone H3 Tail Modifications Alter Structure and Dynamics of the H1 C-Terminal Domain Within Nucleosomes.

Subhra Kanti Das, Ashok Kumar, Fanfan Hao, Amber R Cutter DiPiazza, He Fang, Tae-Hee Lee, Jeffrey J Hayes

Abstract read
In one paragraph

Article in Journal of molecular biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Subhra Kanti DasDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, United States.
Ashok KumarDepartment of Biochemistry and Biophysics, Rochester University Medical Center, Rochester, NY 14625, United States.
Fanfan HaoDepartment of Biochemistry and Biophysics, Rochester University Medical Center, Rochester, NY 14625, United States.
Amber R Cutter DiPiazzaDepartment of Biochemistry and Biophysics, Rochester University Medical Center, Rochester, NY 14625, United States.
He FangDepartment of Biochemistry and Biophysics, Rochester University Medical Center, Rochester, NY 14625, United States.
Tae-Hee LeeDepartment of Chemistry, The Pennsylvania State University, University Park, PA 16802, United States. Electronic address: txl18@psu.edu.
Jeffrey J HayesDepartment of Biochemistry and Biophysics, Rochester University Medical Center, Rochester, NY 14625, United States. Electronic address: Jeffrey_Hayes@urmc.rochester.edu.

Funding

Histone Tall Interactions and Functions in ChromatinR01GM052426 · NIGMS · UNIVERSITY OF ROCHESTER · PI HAYES, JEFFREY J · 1995 to 2021
$6.2M
Training in Cellular, Biochemical and Molecular SciencesT32GM068411 · NIGMS · UNIVERSITY OF ROCHESTER · PI MAQUAT, LYNNE E · 2005 to 2019
$3.9M
Dynamics of DNA-histone interactionsR35GM148208 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI Tae-Hee Lee · 2023 to 2026
$2.5M
Molecular mechanisms of the core and linker histone tail domains that drive chromatin condensationR35GM149420 · NIGMS · UNIVERSITY OF ROCHESTER · PI Jeffrey J Hayes · 2023 to 2026
$1.6M
Dynamics of histone-DNA interactionR01GM123164 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI LEE, TAE-HEE · 2018 to 2021
$1.4M
Effects of histone ubiquitylation on nucleosome dynamicsR01GM130793 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI LEE, TAE-HEE · 2019 to 2022
$1.2M
Acquisition of a Typhoon FLA 9500 Laser Scanning ImagerS10OD021489 · OD · UNIVERSITY OF ROCHESTER · PI BUTLER, JAMES SCOTT · 2017 to 2017
$130k
NIGMS NIH HHS R01 GM052426NIGMS NIH HHS R01 GM123164NIGMS NIH HHS R01 GM130793NIGMS NIH HHS R35 GM148208NIGMS NIH HHS R35 GM149420NIGMS NIH HHS T32 GM068411NIH HHS S10 OD021489
6 · The paper itself

Abstract

The highly positively charged and intrinsically disordered H1 C-terminal domain (CTD) undergoes extensive condensation upon binding to nucleosomes, and stabilizes nucleosomes and higher-order chromatin structures but its interactions in chromatin are not well defined. Using single-molecule FRET we found that about half of the H1 CTDs in H1-nucleosome complexes exhibit well-defined FRET values indicative of distinct, static conformations, while the remainder of the population exhibits exchange between multiple defined FRET structures. Moreover, crosslinking studies indicate that the first 30 residues of the H1 CTD participate in relatively localized contacts with the first ∼25 bp of linker DNA, and that two separate regions in the CTD contribute to H1-dependent organization of linker DNA. Finally, we show that acetylation mimetics within the histone H3 tail markedly reduce the overall extent of H1 CTD condensation and significantly increase the fraction of H1 CTDs undergoing dynamic exchange between FRET states. Our results indicate the nucleosome-bound H1 CTD adopts loosely defined structures that exhibit significantly enhanced dynamics and decondensation upon epigenetic acetylation within the H3 tail.

Indexed as

HistonesNucleosomesChromatinHistone CodeProtein Processing, Post-TranslationalChromatinHistonesNucleosomeshistone acetylationIntrinsically discorded proteinLinker Histone H1nucleosomessingle-molecule FRET

Identifiers

PMID37619707
PMCPMC10530611

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.