Evidence map›Paper›PMID 37616077›Full record

ArticleJournal of microscopy2023

openFrame: A modular, sustainable, open microscopy platform with single-shot, dual-axis optical autofocus module providing high precision and long range of operation.

J Lightley, S Kumar, M Q Lim, E Garcia, F Görlitz, Y Alexandrov, T Parrado, C Hollick, E Steele, K Roßmann and 7 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of microscopy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
11.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
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  11. Open, reproducible hardware for microscopy.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2024
    Article
  12. Optical projection tomography implemented for accessibility and low cost (Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2024
    Article
  13. Article
  14. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 5 institutions in 2 countries.

J LightleyPhotonics Group, Physics Department, Imperial College London, London, UK.
S KumarPhotonics Group, Physics Department, Imperial College London, London, UK.ORCID https://orcid.org/0000-0003-4527-8578
M Q LimPhotonics Group, Physics Department, Imperial College London, London, UK.ORCID https://orcid.org/0000-0001-6253-2836
E GarciaPhotonics Group, Physics Department, Imperial College London, London, UK.
F GörlitzPhotonics Group, Physics Department, Imperial College London, London, UK.
Y AlexandrovPhotonics Group, Physics Department, Imperial College London, London, UK.
T ParradoCairn Research Ltd, Faversham, Kent, England.
C HollickCairn Research Ltd, Faversham, Kent, England.
E SteeleCairn Research Ltd, Faversham, Kent, England.ORCID https://orcid.org/0000-0001-9190-0407
K RoßmannLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID https://orcid.org/0000-0003-4965-9669
J GrahamCairn Research Ltd, Faversham, Kent, England.
J BroichhagenLeibniz-Forschungsinstitut für Molekulare Pharmakologie, Berlin, Germany.ORCID https://orcid.org/0000-0003-3084-6595
I A McNeishDepartment of Surgery and Cancer, Imperial College London, London, UK.
C A RoufosseDepartment of Inflammation and Immunology, Imperial College London, London, UK.
M A A NeilPhotonics Group, Physics Department, Imperial College London, London, UK.
C DunsbyPhotonics Group, Physics Department, Imperial College London, London, UK.
P M W FrenchPhotonics Group, Physics Department, Imperial College London, London, UK.ORCID https://orcid.org/0000-0002-0478-6755
The Francis Crick Institute · GBCairn Research (United Kingdom) · GBApplied Photonics (United Kingdom) · GBImperial College London · GBLeibniz-Forschungsinstitut für Molekulare Pharmakologie · DE

Funding

Biotechnology and Biological Sciences Research Council BBSRC EP/R511547/1Cancer Research UK 29368Cancer Research UK A28450Cancer Research UK A29368Cancer Research UK FC001003Medical Research Council MC_PC_18050Wellcome Trust FC001003
6 · The paper itself

Abstract

'openFrame' is a modular, low-cost, open-hardware microscopy platform that can be configured or adapted to most light microscopy techniques and is easily upgradeable or expandable to multiple modalities. The ability to freely mix and interchange both open-source and proprietary hardware components or software enables low-cost, yet research-grade instruments to be assembled and maintained. It also enables rapid prototyping of advanced or novel microscope systems. For long-term time-lapse image data acquisition, slide-scanning or high content analysis, we have developed a novel optical autofocus incorporating orthogonal cylindrical optics to provide robust single-shot closed-loop focus lock, which we have demonstrated to accommodate defocus up to ±37 μm with <200 nm accuracy, and a two-step autofocus mode which we have shown can operate with defocus up to ±68 μm. We have used this to implement automated single molecule localisation microscopy (SMLM) in a relatively low-cost openFrame-based instrument using multimode diode lasers for excitation and cooled CMOS cameras.

Indexed as

autofocusfluorescence microscopyopen-source microscopysuperresolutionsustainabilitywidening participation

Identifiers

PMID37616077
PMCPMC10953376
OpenAlexW4386116923

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.