Evidence map›Paper›PMID 37615431›Full record

ArticlemSphere2023

Machine learning classification by fitting amplicon sequences to existing OTUs.

Courtney R Armour, Kelly L Sovacool, William L Close, Begüm D Topçuoğlu, Jenna Wiens, Patrick D Schloss

Abstract read
In one paragraph

Article in mSphere, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Courtney R ArmourDepartment of Microbiology and Immunology, University of Michigan , Ann Arbor, Michigan, USA.ORCID 0000-0002-5250-1224
Kelly L SovacoolDepartment of Computational Medicine and Bioinformatics, University of Michigan , Ann Arbor, Michigan, USA.
William L CloseDepartment of Microbiology and Immunology, University of Michigan , Ann Arbor, Michigan, USA.
Begüm D TopçuoğluDepartment of Microbiology and Immunology, University of Michigan , Ann Arbor, Michigan, USA.
Jenna WiensDepartment of Electrical Engineering and Computer Science, University of Michigan , Ann Arbor, Michigan, USA.
Patrick D SchlossDepartment of Microbiology and Immunology, University of Michigan , Ann Arbor, Michigan, USA.ORCID 0000-0002-6935-4275

Funding

Identification of Microbiome Based Markers to Improve Colorectal Cancer DetectionR01CA215574 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI RUFFIN, MACK T., SCHLOSS, PATRICK DAVID · 2018 to 2021
$1.4M
NCI NIH HHS R01 CA215574NCI NIH HHS R01CA215574
6 · The paper itself

Abstract

The ability to use 16S rRNA gene sequence data to train machine learning classification models offers the opportunity to diagnose patients based on the composition of their microbiome. In some applications, the taxonomic resolution that provides the best models may require the use of

Indexed as

MetagenomicsMicrobiotaAlgorithmsHumansRNA, Ribosomal, 16SSequence Analysis, DNARNA, Ribosomal, 16Sbioinformaticsdiagnosticsmachine learningmicrobial ecologymicrobiome

Identifiers

PMID37615431
PMCPMC10597446

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.