Evidence map›Paper›PMID 37614226›Full record

ArticleFrontiers in cell and developmental biology2023

CRISPR interference to evaluate modifiers of

Sarah Pickles, Desiree Zanetti Alepuz, Yuka Koike, Mei Yue, Jimei Tong, Pinghu Liu, Yugui Zhou, Karen Jansen-West, Lillian M Daughrity, Yuping Song and 12 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cell and developmental biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 2 citations in OpenAlex.

  1. Article
  2. Article
  3. CRISPRi: a way to integrate iPSC-derived neuronal models.Biochemical Society transactions · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors at 4 institutions in 1 country.

Sarah PicklesDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Desiree Zanetti AlepuzDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Yuka KoikeDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Mei YueDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Jimei TongDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Pinghu LiuGenetic Engineering Core, National Eye Institute, National Institutes of Health, Bethesda, MD, United States.
Yugui ZhouGenetic Engineering Core, National Eye Institute, National Institutes of Health, Bethesda, MD, United States.
Karen Jansen-WestDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Lillian M DaughrityDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Yuping SongDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Michael DeTureDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Björn OskarssonDepartment of Neurology, Mayo Clinic, Jacksonville, FL, United States.
Neill R Graff-RadfordDepartment of Neurology, Mayo Clinic, Jacksonville, FL, United States.
Bradley F BoeveDepartment of Neurology, Mayo Clinic, Rochester, MN, United States.
Ronald C PetersenDepartment of Neurology, Mayo Clinic, Rochester, MN, United States.
Keith A JosephsDepartment of Neurology, Mayo Clinic, Rochester, MN, United States.
Dennis W DicksonDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Michael E WardNational Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD, United States.
Lijin DongGenetic Engineering Core, National Eye Institute, National Institutes of Health, Bethesda, MD, United States.
Mercedes PrudencioDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Casey N CookDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Leonard PetrucelliDepartment of Neuroscience, Mayo Clinic, Jacksonville, FL, United States.
Center for Neurosciences · USWinnMed · USNational Institutes of Health · USMayo Clinic in Arizona · US

Funding

NEI Genetic Engineering CoreZICEY000458 · NEI · NATIONAL EYE INSTITUTE · PI DONG, LIJIN · 2009 to 2025
$22.6M
Project 3: Neuropathology of the multi-proteinopathy of c9FTD/ALS.P01NS084974 · NINDS · MAYO CLINIC JACKSONVILLE · PI PETRUCELLI, LEONARD · 2014 to 2024
$17.6M
Expanding insights into FTD disease mechanismsR35NS097273 · NINDS · MAYO CLINIC JACKSONVILLE · PI PETRUCELLI, LEONARD · 2017 to 2024
$10.6M
Human Biomarkers CoreU54NS123743 · NINDS · STANFORD UNIVERSITY · PI GITLER, AARON D. · 2021 to 2025
$8.2M
Understanding the role of TDP-43 in Alzheimers disease and FTLDR01AG037491 · NIA · MAYO CLINIC ROCHESTER · PI JOSEPHS, KEITH A · 2010 to 2024
$6.5M
Stathmin-2 and TDP-43 neurodegeneration in Alzheimer’s and multi-etiology dementiasRF1NS120992 · NINDS · UNIVERSITY OF MIAMI SCHOOL OF MEDICINE · PI Keith A Josephs, Mercedes Prudencio · 2021 to 2026
$4.2M
Novel genetic modifiers of C9orf72 and Tau toxicityRF1AG062077 · NIA · MAYO CLINIC ARIZONA · PI FRYER, JOHN DAVID, PETRUCELLI, LEONARD · 2019 to 2019
$4.0M
Mechanistic insights into the link between the A152T risk variant and tauopathyR01AG063780 · NIA · MAYO CLINIC JACKSONVILLE · PI COOK, CASEY N · 2020 to 2024
$2.5M
Impact of T cells on the CNS during aging and Alzheimer’s diseaseR01AG065219 · NIA · MAYO CLINIC JACKSONVILLE · PI COOK, CASEY N · 2020 to 2024
$2.4M
NIA NIH HHS R01 AG037491NIA NIH HHS R01 AG063780NIA NIH HHS R01 AG065219NIA NIH HHS RF1 AG062077NINDS NIH HHS P01 NS084974NINDS NIH HHS R35 NS097273NINDS NIH HHS RF1 NS120992NINDS NIH HHS U54 NS123743
6 · The paper itself

Abstract

Treatments for neurodegenerative disease, including Frontotemporal dementia (FTD) and Amyotrophic lateral sclerosis (ALS), remain rather limited, underscoring the need for greater mechanistic insight and disease-relevant models. Our ability to develop novel disease models of genetic risk factors, disease modifiers, and other FTD/ALS-relevant targets is impeded by the significant amount of time and capital required to develop conventional knockout and transgenic mice. To overcome these limitations, we have generated a novel CRISPRi interference (CRISPRi) knockin mouse. CRISPRi uses a catalytically dead form of Cas9, fused to a transcriptional repressor to knockdown protein expression, following the introduction of single guide RNA against the gene of interest. To validate the utility of this model we have selected the TAR DNA binding protein (TDP-43) splicing target, stathmin-2 (

Indexed as

amyotrophic lateral sclerosisC9orf72CRISPR interferencefrontotemporal dementiaSTMN2TDP-43

Identifiers

PMID37614226
PMCPMC10443592
OpenAlexW4385617049

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.