Evidence map›Paper›PMID 37612746›Full record

ArticleBMC medical genomics2023

Identification of basement membrane-related biomarkers associated with the diagnosis of osteoarthritis based on machine learning.

Xiaojing Huang, Hongming Meng, Zeyu Shou, Jiahuan Yu, Kai Hu, Liangyan Chen, Han Zhou, Zhibiao Bai, Chun Chen

Abstract read
In one paragraph

Article in BMC medical genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xiaojing Huang *Department of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Hongming Meng *Department of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Zeyu ShouWenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Jiahuan YuDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Kai HuWenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Liangyan ChenDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Han ZhouWenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China.
Zhibiao BaiDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China. baizbchina@wmu.edu.cn.
Chun ChenDepartment of Orthopedics, The First Affiliated Hospital of Wenzhou Medical University, Wenzhou City, 325000, Zhejiang Province, China. chenchunkk@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOsteoarthritis is a very common clinical disease in middle-aged and elderly individuals, and with the advent of ageing, the incidence of this disease is gradually increasing. There are few studies on the role of basement membrane (BM)-related genes in OA.

methodWe used bioinformatics and machine learning methods to identify important genes related to BMs in OA patients and performed immune infiltration analysis, lncRNA‒miRNA-mRNA network prediction, ROC analysis, and qRT‒PCR.

resultBased on the results of machine learning, we determined that LAMA2 and NID2 were the key diagnostic genes of OA, which were confirmed by ROC and qRT‒PCR analyses. Immune analysis showed that LAMA2 and NID2 were closely related to resting memory CD4 T cells, mast cells and plasma cells. Two lncRNAs, XIST and TTTY15, were simultaneously identified, and lncRNA‒miRNA‒mRNA network prediction was performed.

conclusionLAMA2 and NID2 are important potential targets for the diagnosis and treatment of OA.

Indexed as

MicroRNAsOsteoarthritisRNA, Long NoncodingAgedBasement MembraneBiomarkersHumansMachine LearningMiddle AgedRNA, MessengerBiomarkersMicroRNAsRNA, Long NoncodingRNA, MessengerBasement membranesBiological markerImmuneMachine learningOsteoarthritis

Identifiers

PMID37612746
PMCPMC10464276

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.