Evidence map›Paper›PMID 37612584›Full record

ArticleCell communication and signaling : CCS2023

RepID represses megakaryocytic differentiation by recruiting CRL4A-JARID1A at DAB2 promoter.

Jae-Hyun Jo, Jong-Uk Park, Yeong-Mu Kim, Seon-Mi Ok, Dong-Kyu Kim, Dong-Hyun Jung, Hye-Ji Kim, Hyun-A Seong, Hyo Je Cho, Jihoon Nah and 5 more

Open access · goldAbstract readVideo-Audio Media
In one paragraph

Article in Cell communication and signaling : CCS, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 2 institutions in 2 countries.

Jae-Hyun JoDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Jong-Uk ParkDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Yeong-Mu KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Seon-Mi OkDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Dong-Kyu KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Dong-Hyun JungDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hye-Ji KimDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hyun-A SeongDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Hyo Je ChoDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Jihoon NahDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Sangjune KimDepartment of Biological Sciences and Biotechnology, Chungbuk National University, Cheongju, 28644, Republic of Korea.
Haiqing FuDevelopmental Therapeutics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD, 20892-4255, USA.
Christophe E RedonDevelopmental Therapeutics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD, 20892-4255, USA.
Mirit I AladjemDevelopmental Therapeutics Branch, Center for Cancer Research, NCI, NIH, Bethesda, MD, 20892-4255, USA.
Sang-Min JangDepartment of Biochemistry, Chungbuk National University, Cheongju, 28644, Republic of Korea. smjang@cbnu.ac.kr.
Chungbuk National University · KRCenter for Cancer Research · US

Funding

Initiation of DNA Replication in Mammalian CellsZIABC010411 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI ALADJEM, MIRIT · 2009 to 2025
$25.0M
Intramural NIH HHS ZIA BC010411NCI NIH HHS 1ZIABC010411 to MIA
6 · The paper itself

Abstract

backgroundMegakaryocytes (MKs) are platelet precursors, which arise from hematopoietic stem cells (HSCs). While MK lineage commitment and differentiation are accompanied by changes in gene expression, many factors that modulate megakaryopoiesis remain to be uncovered. Replication initiation determinant protein (RepID) which has multiple histone-code reader including bromodomain, cryptic Tudor domain and WD40 domains and Cullin 4-RING E3 ubiquitin ligase complex (CRL4) recruited to chromatin mediated by RepID have potential roles in gene expression changes via epigenetic regulations. We aimed to investigate whether RepID-CRL4 participates in transcriptional changes required for MK differentiation.

methodsThe PCR array was performed using cDNAs derived from RepID-proficient or RepID-deficient K562 erythroleukemia cell lines. Correlation between RepID and DAB2 expression was examined in the Cancer Cell Line Encyclopedia (CCLE) through the CellMinerCDB portal. The acceleration of MK differentiation in RepID-deficient K562 cells was determined by estimating cell sizes as well as counting multinucleated cells known as MK phenotypes, and by qRT-PCR analysis to validate transcripts of MK markers using phorbol 12-myristate 13-acetate (PMA)-mediated MK differentiation condition. Interaction between CRL4 and histone methylation modifying enzymes were investigated using BioGRID database, immunoprecipitation and proximity ligation assay. Alterations of expression and chromatin binding affinities of RepID, CRL4 and histone methylation modifying enzymes were investigated using subcellular fractionation followed by immunoblotting. RepID-CRL4-JARID1A-based epigenetic changes on DAB2 promoter were analyzed by chromatin-immunoprecipitation and qPCR analysis.

resultsRepID-deficient K562 cells highly expressing MK markers showed accelerated MKs differentiation exhibiting increases in cell size, lobulated nuclei together with reaching maximum levels of MK marker expression earlier than RepID-proficient K562 cells. Recovery of WD40 domain-containing RepID constructs in RepID-deficient background repressed DAB2 expression. CRL4A formed complex with histone H3K4 demethylase JARID1A in soluble nucleus and loaded to the DAB2 promoter in a RepID-dependent manner during proliferation condition. RepID, CRL4A, and JARID1A were dissociated from the chromatin during MK differentiation, leading to euchromatinization of the DAB2 promoter.

conclusionThis study uncovered a role for the RepID-CRL4A-JARID1A pathway in the regulation of gene expression for MK differentiation, which can form the basis for the new therapeutic approaches to induce platelet production. Video Abstract.

Indexed as

Cell NucleusHistonesCell Cycle ProteinsCell DifferentiationChromatinTudor DomainCell Cycle ProteinsChromatinHistonesCRL4AJARID1AMegakaryocytic differentiationRepID

Identifiers

PMID37612584
PMCPMC10463337
OpenAlexW4386092366

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.