Evidence map›Paper›PMID 37612467›Full record

ArticleCommunications chemistry2023

The structure of plastocyanin tunes the midpoint potential by restricting axial ligation of the reduced copper ion.

Claire C Mammoser, Brynn E LeMasters, Sydney G Edwards, Emma M McRae, M Hunter Mullins, Yiqi Wang, Nicholas M Garcia, Katherine A Edmonds, David P Giedroc, Megan C Thielges

Open access · goldAbstract read
In one paragraph

Article in Communications chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Electron transfer in biological systems.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Claire C MammoserIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.ORCID http://orcid.org/0000-0001-8882-1169
Brynn E LeMastersIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.ORCID http://orcid.org/0000-0001-9910-6953
Sydney G EdwardsIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.
Emma M McRaeIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.ORCID http://orcid.org/0000-0003-0095-275X
M Hunter MullinsIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.
Yiqi WangIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.
Nicholas M GarciaIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.ORCID http://orcid.org/0000-0002-6267-2086
Katherine A EdmondsIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.
David P GiedrocIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA.
Megan C ThielgesIndiana University Department of Chemistry, 800 E. Kirkwood Ave., Bloomington, IN, 47405, USA. thielges@indiana.edu.ORCID http://orcid.org/0000-0002-4520-6673
Indiana University Bloomington · USUniversity of Wisconsin–Madison · USJohns Hopkins University · US

Funding

Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Graduate Training Program in Quantitative and Chemical Biology at Indiana University BloomingtonT32GM131994 · NIGMS · TRUSTEES OF INDIANA UNIVERSITY · PI JARED C LEWIS · 2019 to 2026
$2.4M
NIGMS NIH HHS P41 GM103311NIGMS NIH HHS T32 GM131994
6 · The paper itself

Abstract

Blue copper proteins are models for illustrating how proteins tune metal properties. Nevertheless, the mechanisms by which the protein controls the metal site remain to be fully elucidated. A hindrance is that the closed shell Cu(I) site is inaccessible to most spectroscopic analyses. Carbon deuterium (C-D) bonds used as vibrational probes afford nonperturbative, selective characterization of the key cysteine and methionine copper ligands in both redox states. The structural integrity of Nostoc plastocyanin was perturbed by disrupting potential hydrogen bonds between loops of the cupredoxin fold via mutagenesis (S9A, N33A, N34A), variably raising the midpoint potential. The C-D vibrations show little change to suggest substantial alteration to the Cu(II) coordination in the oxidized state or in the Cu(I) interaction with the cysteine ligand. They rather indicate, along with visible and NMR spectroscopy, that the methionine ligand distinctly interacts more strongly with the Cu(I) ion, in line with the increases in midpoint potential. Here we show that the protein structure determines the redox properties by restricting the interaction between the methionine ligand and Cu(I) in the reduced state.

Identifiers

PMID37612467
PMCPMC10447441
OpenAlexW4386097596

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.