Evidence map›Paper›PMID 37611404›Full record

ArticleJournal of the American Chemical Society2023

A Ferric-Superoxide Intermediate Initiates P450-Catalyzed Cyclic Dipeptide Dimerization.

Hannah E Gering, Xiaojun Li, Haoyu Tang, Paul D Swartz, Wei-Chen Chang, Thomas M Makris

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. A nucleobase-driven P450 peroxidase system enables regio- and stereo-specific formation of C─C and C─N bonds.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Fresh Impetus in the Chemistry of Calcium Peroxides.Journal of the American Chemical Society · 2024
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Hannah E GeringDepartment of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Xiaojun LiDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Haoyu TangDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Paul D SwartzDepartment of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.
Wei-Chen ChangDepartment of Chemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.ORCID 0000-0002-2341-9846
Thomas M MakrisDepartment of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, North Carolina 27695, United States.ORCID 0000-0001-7927-620X
North Carolina State University · US

Funding

Understanding How Nonheme Iron-Dependent Enzymes Assemble Pharmacophores: Studies of Cyclopropane, Aziridine, and Isonitrile FormationR01GM127588 · NIGMS · NORTH CAROLINA STATE UNIVERSITY RALEIGH · PI Wei-chen Chang · 2018 to 2026
$3.3M
Divergence of Carboxylate-Bridged Diiron Enzymes for Natural Product BiosynthesisR01GM135315 · NIGMS · UNIVERSITY OF SOUTH CAROLINA AT COLUMBIA · PI MAKRIS, THOMAS M · 2019 to 2022
$1.4M
NIGMS NIH HHS R01 GM127588NIGMS NIH HHS R01 GM135315
6 · The paper itself

Abstract

The cytochrome P450 (CYP) AspB is involved in the biosynthesis of the diketopiperazine (DKP) aspergilazine A. Tryptophan-linked dimeric DKP alkaloids are a large family of natural products that are found in numerous species and exhibit broad and often potent bioactivity. The proposed mechanisms for C-N bond formation by AspB, and similar C-C bond formations by related CYPs, have invoked the use of a ferryl-intermediate as an oxidant to promote substrate dimerization. Here, the parallel application of steady-state and transient kinetic approaches reveals a very different mechanism that involves a ferric-superoxide species as a primary oxidant to initiate DKP-assembly. Single turnover kinetic isotope effects and a substrate analog suggest the probable nature and site for abstraction. The direct observation of CYP-superoxide reactivity rationalizes the atypical outcome of AspB and reveals a new reaction manifold in heme enzymes.

Indexed as

IronSuperoxidesCatalysisCytochrome P-450 Enzyme SystemDiketopiperazinesDimerizationDipeptidesElectrolytesOxidantsCytochrome P-450 Enzyme SystemDiketopiperazinesDipeptidesElectrolytesIronOxidantsSuperoxides

Identifiers

PMID37611404
PMCPMC12210279
OpenAlexW4386089779

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.