Evidence map›Paper›PMID 37611223›Full record

ArticleG3 (Bethesda, Md.)2023

Long-read genome assemblies for the study of chromosome expansion: Drosophila kikkawai, Drosophila takahashii, Drosophila bipectinata, and Drosophila ananassae.

Wilson Leung, Nicole Torosin, Weihuan Cao, Laura K Reed, Cindy Arrigo, Sarah C R Elgin, Christopher E Ellison

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Drosophila kikkawai - Sox102F.microPublication biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Wilson LeungDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Nicole TorosinDepartment of Genetics and Human Genetics Institute of New Jersey, Rutgers University, Piscataway, NJ 08854, USA.
Weihuan CaoDepartment of Genetics and Human Genetics Institute of New Jersey, Rutgers University, Piscataway, NJ 08854, USA.
Laura K ReedDepartment of Biological Sciences, The University of Alabama, Tuscaloosa, AL 35487, USA.
Cindy ArrigoDepartment of Biology, New Jersey City University, Jersey City, NJ 07305, USA.
Sarah C R ElginDepartment of Biology, Washington University in St. Louis, St. Louis, MO 63130, USA.
Christopher E EllisonDepartment of Genetics and Human Genetics Institute of New Jersey, Rutgers University, Piscataway, NJ 08854, USA.ORCID 0000-0002-0350-0962

Funding

Expanding the Genomics Education Partnership: Regional Mentoring and Training Networks to Diversify Bioinformatics Education and ResearchR25GM130517 · NIGMS · UNIVERSITY OF ALABAMA IN TUSCALOOSA · PI CHALKER, DOUGLAS LEE, REED, LAURA K · 2019 to 2023
$1.9M
Genetic Specification and Evolution of 3D Genome OrganizationR01GM130698 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI ELLISON, CHRISTOPHER EUGENE · 2018 to 2022
$1.6M
3D Genome Organization and Gene Expression in DrosophilaF32GM140669 · NIGMS · RUTGERS, THE STATE UNIV OF N.J. · PI TOROSIN, NICOLE · 2021 to 2021
$30k
NIGMS NIH HHS F32 GM140669NIGMS NIH HHS R01 GM130698NIGMS NIH HHS R25 GM130517NIH HHS R01GM130698
6 · The paper itself

Abstract

Flow cytometry estimates of genome sizes among species of Drosophila show a 3-fold variation, ranging from ∼127 Mb in Drosophila mercatorum to ∼400 Mb in Drosophila cyrtoloma. However, the assembled portion of the Muller F element (orthologous to the fourth chromosome in Drosophila melanogaster) shows a nearly 14-fold variation in size, ranging from ∼1.3 Mb to >18 Mb. Here, we present chromosome-level long-read genome assemblies for 4 Drosophila species with expanded F elements ranging in size from 2.3 to 20.5 Mb. Each Muller element is present as a single scaffold in each assembly. These assemblies will enable new insights into the evolutionary causes and consequences of chromosome size expansion.

Indexed as

DrosophilaDrosophila melanogasterAnimalsChromosomesGenomeDrosophila ananassae strain 14024-0371 13Drosophila bipectinata strain 14024-0381.07Drosophila kikkawai strain 14028-0561.14Drosophila takahashii strain IR98-3 E-12201

Identifiers

PMID37611223
PMCPMC10542312

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.