Evidence map›Paper›PMID 37611161›Full record

ArticleBlood advances2023

Dissecting the role of SWI/SNF component ARID1B in steady-state hematopoiesis.

Vikas Madan, Pavithra Shyamsunder, Pushkar Dakle, Teoh Weoi Woon, Lin Han, Zeya Cao, Hazimah Binte Mohd Nordin, Shi Jizhong, Yu Shuizhou, Md Zakir Hossain and 1 more

Open access · goldAbstract read
In one paragraph

Article in Blood advances, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Chromatin remodeling in tissue stem cell fate determination.Cell regeneration (London, England) · 2024
    Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Vikas MadanCancer Science Institute of Singapore, National University of Singapore, Singapore.
Pavithra ShyamsunderCancer Science Institute of Singapore, National University of Singapore, Singapore.
Pushkar DakleCancer Science Institute of Singapore, National University of Singapore, Singapore.
Teoh Weoi WoonCancer Science Institute of Singapore, National University of Singapore, Singapore.
Lin HanCancer Science Institute of Singapore, National University of Singapore, Singapore.
Zeya CaoCancer Science Institute of Singapore, National University of Singapore, Singapore.
Hazimah Binte Mohd NordinCancer Science Institute of Singapore, National University of Singapore, Singapore.
Shi JizhongCancer Science Institute of Singapore, National University of Singapore, Singapore.
Yu ShuizhouCancer Science Institute of Singapore, National University of Singapore, Singapore.
Md Zakir HossainCancer Science Institute of Singapore, National University of Singapore, Singapore.
H Phillip KoefflerCancer Science Institute of Singapore, National University of Singapore, Singapore.
National University Cancer Institute, Singapore · SGNational University of Singapore · SGCedars-Sinai Medical Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The adenosine triphosphate (ATP)-dependent chromatin remodeling complex, SWItch/Sucrose Non-Fermentable (SWI/SNF), has been implicated in normal hematopoiesis. The AT-rich interaction domain 1B (ARID1B) and its paralog, ARID1A, are mutually exclusive, DNA-interacting subunits of the BRG1/BRM-associated factor (BAF) subclass of SWI/SNF complex. Although the role of several SWI/SNF components in hematopoietic differentiation and stem cell maintenance has been reported, the function of ARID1B in hematopoietic development has not been defined. To this end, we generated a mouse model of Arid1b deficiency specifically in the hematopoietic compartment. Unlike the extensive phenotype observed in mice deficient in its paralog, ARID1A, Arid1b knockout (KO) mice exhibited a modest effect on steady-state hematopoiesis. Nonetheless, transplantation experiments showed that the reconstitution of myeloid cells in irradiated recipient mice was dependent on ARID1B. Furthermore, to assess the effect of the complete loss of ARID1 proteins in the BAF complex, we generated mice lacking both ARID1A and ARID1B in the hematopoietic compartment. The double-KO mice succumbed to acute bone marrow failure resulting from complete loss of BAF-mediated chromatin remodeling activity. Our Assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) analyses revealed that >80% of loci regulated by ARID1B were distinct from those regulated by ARID1A; and ARID1B controlled expression of genes crucial in myelopoiesis. Overall, loss of ARID1B affected chromatin dynamics in murine hematopoietic stem and progenitor cells, albeit to a lesser extent than cells lacking ARID1A.

Indexed as

HematopoiesisNuclear ProteinsAnimalsCell DifferentiationChromatinDNA-Binding ProteinsMiceTranscription FactorsArid1a protein, mouseChromatinDNA-Binding ProteinsNuclear ProteinsTranscription Factors

Identifiers

PMID37611161
PMCPMC10632677
OpenAlexW4386090407

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.