Evidence map›Paper›PMID 37611017›Full record

ArticlePloS one2023

Persistent Salmonella enterica serovar Typhi sub-populations within host interrogated by whole genome sequencing and metagenomics.

Eby M Sim, Qinning Wang, Peter Howard, Rady Kim, Ling Lim, Kirsty Hope, Vitali Sintchenko

Abstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Emerging Resistance and Virulence Patterns inAntibiotics (Basel, Switzerland) · 2025
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eby M SimSydney Institute for Infectious Diseases, The University of Sydney, Westmead, New South Wales, Australia.ORCID 0000-0002-3716-7344
Qinning WangInstitute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia.
Peter HowardInstitute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia.
Rady KimInstitute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia.
Ling LimInstitute of Clinical Pathology and Medical Research, NSW Health Pathology, Westmead, New South Wales, Australia.
Kirsty HopeHealth Protection, New South Wales Ministry of Health, North Sydney, New South Wales, Australia.
Vitali SintchenkoSydney Institute for Infectious Diseases, The University of Sydney, Westmead, New South Wales, Australia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Salmonella enterica serovar Typhi (S. Typhi) causes typhoid fever and, in some cases, chronic carriage after resolution of acute disease. This study examined sequential isolates of S. Typhi from a single host with persistent asymptomatic infection. These isolates, along with another S. Typhi isolate recovered from a household contact with typhoid fever, were subjected to whole genome sequencing and analysis. In addition, direct sequencing of the bile fluid from the host with persistent infection was also performed. Comparative analysis of isolates revealed three sub-populations of S. Typhi with distinct genetic patterns. Metagenomic sequencing recognised only two of the three sub-populations within the bile fluid. The detection and investigation of insertion sequences IS10R and associated deletions complemented analysis of single nucleotide polymorphisms. These findings improve our understanding of within-host dynamics of S. Typhi in cases of persistent infection and inform epidemiological investigations of transmission events associated with chronic carriers.

Indexed as

Salmonella typhiTyphoid FeverHumansMetagenomicsPersistent InfectionWhole Genome Sequencing

Identifiers

PMID37611017
PMCPMC10446203

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.