Evidence map›Paper›PMID 37610606›Full record

ArticleJournal of assisted reproduction and genetics2023

Integrating imaging-based classification and transcriptomics for quality assessment of human oocytes according to their reproductive efficiency.

Xavier Viñals Gonzalez, Christopher Thrasivoulou, Roy Pascal Naja, Srividya Seshadri, Paul Serhal, Sioban Sen Gupta

Abstract read
In one paragraph

Article in Journal of assisted reproduction and genetics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Xavier Viñals GonzalezPreimplantation Genetics Group, Institute for Women's Health, University College London, 84-86 Chenies Mews, Bloomsbury, London, WC1E 6HU, UK. xavier.gonzalez.18@ucl.ac.uk.ORCID http://orcid.org/0000-0002-1898-5202
Christopher ThrasivoulouResearch Department of Cell and Developmental Biology, University College London, Rockefeller Building, London, WC1E 6DE, UK.ORCID http://orcid.org/0000-0001-9425-8624
Roy Pascal NajaPreimplantation Genetics Group, Institute for Women's Health, University College London, 84-86 Chenies Mews, Bloomsbury, London, WC1E 6HU, UK.
Srividya SeshadriThe Centre for Reproductive and Genetic Health, 230-232 Great Portland St, Fitzrovia, W1W 5QS, London, UK.ORCID http://orcid.org/0000-0003-1967-6089
Paul SerhalThe Centre for Reproductive and Genetic Health, 230-232 Great Portland St, Fitzrovia, W1W 5QS, London, UK.
Sioban Sen GuptaPreimplantation Genetics Group, Institute for Women's Health, University College London, 84-86 Chenies Mews, Bloomsbury, London, WC1E 6HU, UK.ORCID http://orcid.org/0000-0003-3550-6119

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeUtilising non-invasive imaging parameters to assess human oocyte fertilisation, development and implantation; and their influence on transcriptomic profiles.

methodsA ranking tool was designed using imaging data from 957 metaphase II stage oocytes retrieved from 102 patients undergoing ART. Hoffman modulation contrast microscopy was conducted with an Olympus IX53 microscope. Images were acquired prior to ICSI and processed using ImageJ for optical density and grey-level co-occurrence matrices texture analysis. Single-cell RNA sequencing of twenty-three mature oocytes classified according to their competence was performed. RESULT(S): Overall fertilisation, blastulation and implantation rates were 73.0%, 62.6% and 50.8%, respectively. Three different algorithms were produced using binary logistic regression methods based on "optimal" quartiles, resulting in an accuracy of prediction of 76.6%, 67% and 80.7% for fertilisation, blastulation and implantation. Optical density, gradient, inverse difference moment (homogeneity) and entropy (structural complexity) were the parameters with highest predictive properties. The ranking tool showed high sensitivity (68.9-90.8%) but with limited specificity (26.5-62.5%) for outcome prediction. Furthermore, five differentially expressed genes were identified when comparing "good" versus "poor" competent oocytes. CONCLUSION(S): Imaging properties can be used as a tool to assess differences in the ooplasm and predict laboratory and clinical outcomes. Transcriptomic analysis suggested that oocytes with lower competence may have compromised cell cycle either by non-reparable DNA damage or insufficient ooplasmic maturation. Further development of algorithms based on image parameters is encouraged, with an increased balanced cohort and validated prospectively in multicentric studies.

Indexed as

OocytesTranscriptomeEmbryo ImplantationGene Expression ProfilingHumansOogenesisHuman oocyteImage analysisOutcome predictionQualityTranscriptome

Identifiers

PMID37610606
PMCPMC10643756

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