Evidence map›Paper›PMID 37609440›Full record

ArticlePeerJ2023

THAPBI PICT-a fast, cautious, and accurate metabarcoding analysis pipeline.

Peter J A Cock, David E L Cooke, Peter Thorpe, Leighton Pritchard

Abstract read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Peter J A CockInformation and Computational Sciences, The James Hutton Institute, Dundee, United Kingdom.ORCID 0000-0001-9513-9993
David E L CookeCell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom.ORCID 0000-0002-9154-7954
Peter ThorpeCell and Molecular Sciences, The James Hutton Institute, Dundee, United Kingdom.
Leighton PritchardInformation and Computational Sciences, The James Hutton Institute, Dundee, United Kingdom.ORCID 0000-0002-8392-2822

Funding

Biotechnology and Biological Sciences Research Council
6 · The paper itself

Abstract

THAPBI PICT is an open source software pipeline for metabarcoding analysis of Illumina paired-end reads, including cases of multiplexing where more than one amplicon is amplified per DNA sample. Initially a

Indexed as

Anatomy, RegionalPhytophthoraArtifactsCultureDatabases, FactualAmpliconBarcodingBiodiversityEnvironmental DNAMetabarcodingPhytophthora

Identifiers

PMID37609440
PMCPMC10441533

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.