Evidence map›Paper›PMID 37609344›Full record

ArticlebioRxiv : the preprint server for biology2023

Combinatorial genetic strategy accelerates the discovery of cancer genotype-phenotype associations.

Shan Li, Alicia Wong, Huiyun Sun, Vipul Bhatia, Gerardo Javier, Sujata Jana, Robert B Montgomery, Jonathan L Wright, Hung-Ming Lam, Andrew C Hsieh and 3 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors.

Shan Li
Alicia Wong
Huiyun Sun
Vipul Bhatia
Gerardo Javier
Sujata Jana
Robert B Montgomery
Jonathan L Wright
Hung-Ming Lam
Andrew C Hsieh
Bishoy M Faltas
Michael C Haffner
John K Lee

Funding

Hormone signaling and translation control in advanced prostate cancerR37CA230617 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI HSIEH, ANDREW CALEB · 2019 to 2025
$3.1M
Transcriptional-translational conflict in bladder epithelial homeostasis and cancerR01CA276308 · NCI · FRED HUTCHINSON CANCER CENTER · PI Andrew Caleb Hsieh · 2023 to 2026
$2.3M
NCI NIH HHS R01 CA276308NCI NIH HHS R37 CA230617
6 · The paper itself

Abstract

Available genetically-defined cancer models are limited in genotypic and phenotypic complexity and underrepresent the heterogeneity of human cancer. Herein, we describe a combinatorial genetic strategy applied to an organoid transformation assay to rapidly generate diverse, clinically relevant bladder and prostate cancer models. Importantly, the clonal architecture of the resultant tumors can be resolved using single-cell or spatially resolved next-generation sequencing to uncover polygenic drivers of cancer phenotypes.

Identifiers

PMID37609344
PMCPMC10441433

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.