Evidence map›Paper›PMID 37608799›Full record

ArticleNAR genomics and bioinformatics2023

ZENBU-Reports: a graphical web-portal builder for interactive visualization and dissemination of genome-scale data.

Jessica Severin, Saumya Agrawal, Jordan A Ramilowski, Ruslan Deviatiiarov, Jay W Shin, Piero Carninci, Michiel de Hoon

Abstract read
In one paragraph

Article in NAR genomics and bioinformatics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jessica SeverinRIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.ORCID https://orcid.org/0000-0003-1274-208X
Saumya AgrawalRIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Jordan A RamilowskiRIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Ruslan DeviatiiarovInternational Research Center for Medical Sciences, Kumamoto University, Kumamoto, Japan.
Jay W ShinRIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Piero CarninciRIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.
Michiel de HoonRIKEN, Center for Integrative Medical Sciences, Yokohama, 230-0045, Japan.ORCID https://orcid.org/0000-0003-0489-2352

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the genomic era, data dissemination and visualization is an integral part of scientific publications and research projects involving international consortia producing massive genome-wide data sets, intra-organizational collaborations, or individual labs. However, creating custom supporting websites is oftentimes impractical due to the required programming effort, web server infrastructure, and data storage facilities, as well as the long-term maintenance burden. ZENBU-Reports (https://fantom.gsc.riken.jp/zenbu/reports) is a web application to create interactive scientific web portals by using graphical interfaces while providing storage and secured collaborative sharing for data uploaded by users. ZENBU-Reports provides the scientific visualization elements commonly used in supplementary websites, publications and presentations, presenting a complete solution for the interactive display and dissemination of data and analysis results during the full lifespan of a scientific project both during the active research phase and after publication of the results.

Identifiers

PMID37608799
PMCPMC10440783

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.