Evidence map›Paper›PMID 37607189›Full record

ArticlePloS one2023

Cultured fibroblasts of the Okinawa rail present delayed innate immune response compared to that of chicken.

Masafumi Katayama, Tomokazu Fukuda, Noriko Kato, Takashi Nagamine, Yumiko Nakaya, Nobuyoshi Nakajima, Manabu Onuma

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Masafumi KatayamaBiodiversity Division, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan.ORCID 0000-0001-8197-3338
Tomokazu FukudaGraduate School of Science and Engineering, Iwate University, Morioka-city, Japan.
Noriko KatoBiodiversity Division, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan.
Takashi NagamineOkinawa Wildlife Federation, Uruma, Okinawa, Japan.
Yumiko NakayaOkinawa Wildlife Federation, Uruma, Okinawa, Japan.
Nobuyoshi NakajimaBiodiversity Division, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan.
Manabu OnumaBiodiversity Division, National Institute for Environmental Studies, Tsukuba, Ibaraki, Japan.
National Institute for Environmental Studies · JPIwate University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Okinawa rail is endemic to Okinawa Island and is categorized as an endangered animal. In this study, we focused on innate immunity because it is the first line of host defense. In particular, signals recognizing foreign RNA (e.g., viruses) are important for host defense because they activate the host immune system. The retinoic acid-inducible gene I (RIG-I)-like receptor (RLR) families (RIG-I, MDA5, and LGP2) are sensors that activate innate immunity. Therefore, we analyzed these functions in the Okinawa rail using genomic and cellular analyses of fibroblasts. Fibroblasts can be obtained from dead individuals, allowing these cells to be obtained from dead individuals, which is particularly useful for endangered species. The MDA5 gene of Okinawa rail was sequenced using the Sanger method following PCR amplification and extraction of the amplified sequence from agarose gel. Additionally, mRNA expression analysis of cultured fibroblasts exposed to poly I:C was done. The MDA5 gene was found to be a mutated nonfunctional gene in the Okinawa rail. The mRNA expression rates of inflammatory cytokine genes type I IFN, and Mx1 were slower in Okinawa rail than in chicken cultured fibroblasts. Similar to the mRNA expression results, cell number and live cell ratio also slowly decreased in the Okinawa rail compared with chicken cultured fibroblasts, indicating that the innate immune reaction differs between chicken and the Okinawa rail. To the best of our knowledge, this is the first experimental evaluation of the loss of function of the Okinawa rail innate immune genes. In conclusion, our results provide a basis for conservation strategies for the endangered Okinawa rail.

Indexed as

ChickensFibroblastsAnimalsCell CountImmunity, InnateRNA, MessengerRNA, Messenger

Identifiers

PMID37607189
PMCPMC10443837
OpenAlexW4386065900

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.