Evidence map›Paper›PMID 37607185›Full record

ArticlePloS one2023

Mutations in microRNA-128-2-3p identified with amplification-free hybridization assay.

Sofie Slott, Cecilie Schiøth Krüger-Jensen, Izabela Ferreira da Silva, Nadia Bom Pedersen, Kira Astakhova

Abstract read
In one paragraph

Article in PloS one, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sofie SlottDepartment of Chemistry, Technical University of Denmark, Kgs Lyngby, Denmark.
Cecilie Schiøth Krüger-JensenDepartment of Chemistry, Technical University of Denmark, Kgs Lyngby, Denmark.
Izabela Ferreira da SilvaPrograma Interunidades de Pós-Graduacão em Bioinformática, Universidade Federal de Minas Gerais, Belo Horizonte-MG, Brazil.
Nadia Bom PedersenDepartment of Chemistry, Technical University of Denmark, Kgs Lyngby, Denmark.
Kira AstakhovaDepartment of Chemistry, Technical University of Denmark, Kgs Lyngby, Denmark.ORCID 0000-0003-4878-0301

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We describe a quantitative detection method for mutated microRNA in human plasma samples. Specific oligonucleotides designed from a Peyrard-Bishop model allowed accurate prediction of target:probe recognition affinity and specificity. Our amplification-free tandem bead-based hybridization assay had limit of detection of 2.2 pM. Thereby, the assay allowed identification of single-nucleotide polymorphism mismatch profiles in clinically relevant microRNA-128-2-3p, showing terminal mutations that correlate positively with inflammatory colitis and colorectal cancer.

Indexed as

Hybridization, GeneticMicroRNAsBiological AssayHumansMutationNucleic Acid HybridizationMicroRNAsMIRN128 microRNA, human

Identifiers

PMID37607185
PMCPMC10443835

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.