Evidence map›Paper›PMID 37602956›Full record

ArticleThe EMBO journal2023

Lineage commitment of dermal fibroblast progenitors is controlled by Kdm6b-mediated chromatin demethylation.

Quan M Phan, Lucia Salz, Sam S Kindl, Jayden S Lopez, Sean M Thompson, Jasson Makkar, Iwona M Driskell, Ryan R Driskell

Open access · hybridAbstract read
In one paragraph

Article in The EMBO journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.5field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Review
  7. Article
  8. The development of hair follicles and nail.Developmental biology · 2024
    Review
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  10. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Quan M PhanSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.ORCID 0000-0002-4421-636X
Lucia SalzNorth Rhine-Westphalia Technical University of Aachen, Aachen, Germany.ORCID 0000-0002-4910-7840
Sam S KindlSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.ORCID 0009-0002-4782-3701
Jayden S LopezSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.
Sean M ThompsonSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.ORCID 0000-0001-8075-9217
Jasson MakkarSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.
Iwona M DriskellSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.
Ryan R DriskellSchool of Molecular Biosciences, Washington State University, Pullman, WA, USA.ORCID 0000-0001-7673-2564
Washington State University · USFH Aachen · DE

Funding

TRAINING IN BIOTECHNOLOGY: EMPHASIS ON PROTEIN CHEMISTRYT32GM008336 · NIGMS · WASHINGTON STATE UNIVERSITY · PI CALL, DOUGLAS R. · 1989 to 2023
$8.9M
Investigating the role of Lef1 in fibroblast lineages to induce skin regeneration and reverse agingR01AR078743 · NIAMS · WASHINGTON STATE UNIVERSITY · PI DRISKELL, RYAN · 2021 to 2025
$1.6M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Modulating Lef1 Activation in Fibroblasts During Hair Follicle Regeneration in Skin WoundsR56AR073778 · NIAMS · WASHINGTON STATE UNIVERSITY · PI DRISKELL, RYAN · 2020 to 2020
$337k
NIAMS NIH HHS R01 AR078743NIAMS NIH HHS R56 AR073778NIGMS NIH HHS T32 GM008336NIH HHS S10 OD026929
6 · The paper itself

Abstract

Dermal Fibroblast Progenitors (DFPs) differentiate into distinct fibroblast lineages during skin development. However, the epigenetic mechanisms that regulate DFP differentiation are not known. Our objective was to use multimodal single-cell approaches, epigenetic assays, and allografting techniques to define a DFP state and the mechanism that governs its differentiation potential. Our initial results indicated that the overall transcription profile of DFPs is repressed by H3K27me3 and has inaccessible chromatin at lineage-specific genes. Surprisingly, the repressive chromatin profile of DFPs renders them unable to reform the skin in allograft assays despite their multipotent potential. We hypothesized that chromatin derepression was modulated by the H3K27me3 demethylase, Kdm6b/Jmjd3. Dermal fibroblast-specific deletion of Kdm6b/Jmjd3 in mice resulted in adipocyte compartment ablation and inhibition of mature dermal papilla functions, confirmed by additional single-cell RNA-seq, ChIP-seq, and allografting assays. We conclude that DFPs are functionally derepressed during murine skin development by Kdm6b/Jmjd3. Our studies therefore reveal a multimodal understanding of how DFPs differentiate into distinct fibroblast lineages and provide a novel publicly available multiomics search tool.

Indexed as

ChromatinHistonesAnimalsCell DifferentiationDemethylationFibroblastsJumonji Domain-Containing Histone DemethylasesMiceChromatinHistonesJumonji Domain-Containing Histone DemethylasesKdm6b protein, mousedermal papillaepigeneticsfibroblast progenitorKdm6bmultiomics

Identifiers

PMID37602956
PMCPMC10548174
OpenAlexW4386019700

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.