Evidence map›Paper›PMID 37600946›Full record

ArticleFrontiers in cellular and infection microbiology2023

Prediction accuracy of regulatory elements from sequence varies by functional sequencing technique.

Ronald J Nowling, Kimani Njoya, John G Peters, Michelle M Riehle

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 73% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Ronald J NowlingElectrical Engineering and Computer Science, Milwaukee School of Engineering, Milwaukee, WI, United States.
Kimani NjoyaDepartment of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, United States.
John G PetersElectrical Engineering and Computer Science, Milwaukee School of Engineering, Milwaukee, WI, United States.
Michelle M RiehleDepartment of Microbiology and Immunology, Medical College of Wisconsin, Milwaukee, WI, United States.
Medical College of Wisconsin · USMilwaukee School of Engineering · US

Funding

Noncoding DNA regulatory elements and Anopheles vector biologyR01AI145999 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI RIEHLE, MICHELLE M · 2020 to 2024
$1.8M
NIAID NIH HHS R01 AI145999
6 · The paper itself

Abstract

Introduction: Various sequencing based approaches are used to identify and characterize the activities of Methods: Here, machine learning models are employed to evaluate the accuracy with which Results and discussion: Models trained and evaluated on

Indexed as

Drosophila melanogasterHistonesAnimalsChromatinDeoxyribonucleasesSequence Analysis, DNAChromatinDeoxyribonucleasesHistonesChIP-seqDNase-seqenhancersfunctional sequencingmachine learningsequence modelsSTARR-seq

Identifiers

PMID37600946
PMCPMC10433755
OpenAlexW4385497084

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.