Evidence map›Paper›PMID 37598041›Full record

ArticleJournal of cystic fibrosis : official journal of the European Cystic Fibrosis Society2023

The association between gut microbiome and growth in infants with cystic fibrosis.

A R Deschamp, Y Chen, W F Wang, M Rasic, J Hatch, D B Sanders, S C Ranganathan, T Ferkol, D Perkins, P Finn and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.8field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

A R DeschampIndiana University School of Medicine, Riley Children's Hospital, 340 10th Street, Indianapolis, IN 46202, United States of America. Electronic address: ashley.deschamp@unmc.edu.
Y ChenUniversity of Illinois Chicago, 1200 West Harrison Street, Chicago, Illinois 60607, United States of America.
W F WangUniversity of Illinois Chicago, 1200 West Harrison Street, Chicago, Illinois 60607, United States of America.
M RasicUniversity of Illinois Chicago, 1200 West Harrison Street, Chicago, Illinois 60607, United States of America.
J HatchIndiana University School of Medicine, Riley Children's Hospital, 340 10th Street, Indianapolis, IN 46202, United States of America.
D B SandersIndiana University School of Medicine, Riley Children's Hospital, 340 10th Street, Indianapolis, IN 46202, United States of America.
S C RanganathanRoyal Children's Hospital, Murdoch Children's Research Institute, 50 Flemington Road, Parkville, Victoria 3052, Australia.
T FerkolWashington University, 660 S Euclid Ave, St. Louis, MO 63110, United States of America.
D PerkinsUniversity of Illinois Chicago, 1200 West Harrison Street, Chicago, Illinois 60607, United States of America.
P FinnUniversity of Illinois Chicago, 1200 West Harrison Street, Chicago, Illinois 60607, United States of America.
S D DavisIndiana University School of Medicine, Riley Children's Hospital, 340 10th Street, Indianapolis, IN 46202, United States of America.
University of Illinois Chicago · USRiley Hospital for Children · USRoyal Children's Hospital · AUWashington University in St. Louis · US

Funding

Viral Pathogenesis of Early Cystic Fibrosis Lung DiseaseR01HL116211 · NHLBI · INDIANA UNIVERSITY INDIANAPOLIS · PI DAVIS, STEPHANIE DUGGINS, FERKOL, THOMAS W · 2012 to 2015
$2.2M
Medical Research CouncilNHLBI NIH HHS R01 HL116211
6 · The paper itself

Abstract

backgroundIn cystic fibrosis (CF), pathophysiologic changes in the gastrointestinal tract lead to malnutrition and altered gut microbiome. Microbiome alterations have been linked to linear growth, gut inflammation and respiratory manifestations. Elucidating these gut microbiome alterations may provide insight into future nutritional management in CF.

methodsInfants were followed for 12-months at four sites in the United States (US-CF) and Australia (AUS-CF). 16S rRNA gene sequencing was performed on longitudinal stool samples. Associations between microbial abundance and age, antibiotic prophylaxis, malnutrition, and breast feeding were evaluated using generalized linear mixed models. Taxonomic and predictive functional features were compared between groups.

resultsInfants with CF (N = 78) were enrolled as part of a larger study. AUS-CF infants had higher mean weight-for-age z-scores than US-CF infants (p = 0.02). A subset of participants (CF N = 40, non-CF disease controls N = 10) provided stool samples for microbiome analysis. AUS-CF infants had lower stool alpha diversity compared to US-CF infants (p < 0.001). AUS-CF infants had higher relative abundance of stool Proteobacteria compared to US-CF infants which was associated with antibiotic prophylaxis (p < 0.001). Malnutrition (weight-for-age <10th percentile) was associated with depleted Lactococcus (p < 0.001). Antibiotic prophylaxis (p = 0.002) and malnutrition (p = 0.012) were linked with predicted decreased activity of metabolic pathways responsible for short chain fatty acid processing.

conclusionsIn infants with CF, gut microbiome composition and diversity differed between the two continents. Gut microbial diversity was not linked to growth. The relationship between malnutrition and antibiotic prophylaxis with reduced SCFA fermentation could have implications for gut health and function and warrants additional investigation.

Indexed as

Cystic FibrosisGastrointestinal MicrobiomeMalnutritionFecesFemaleGastrointestinal TractHumansInfantRNA, Ribosomal, 16SRNA, Ribosomal, 16SCystic fibrosisGut microbiomeInfant growth

Identifiers

PMID37598041
PMCPMC10840679
OpenAlexW4385933307

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.